Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK2VW_RS18365 Genome accession   NZ_CP176678
Coordinates   3539240..3539869 (-) Length   209 a.a.
NCBI ID   WP_000841914.1    Uniprot ID   -
Organism   Escherichia coli O121 strain GTVSS-020     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3534240..3544869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VW_RS18350 (ACK2VW_18350) helD 3534482..3536536 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACK2VW_RS18355 (ACK2VW_18355) yccF 3536659..3537105 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACK2VW_RS18360 (ACK2VW_18360) yccS 3537115..3539277 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACK2VW_RS18365 (ACK2VW_18365) sxy/tfoX 3539240..3539869 (-) 630 WP_000841914.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACK2VW_RS18370 (ACK2VW_18370) sulA 3540088..3540597 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACK2VW_RS18375 (ACK2VW_18375) ompA 3540954..3542006 (+) 1053 WP_000750419.1 porin OmpA -
  ACK2VW_RS18380 (ACK2VW_18380) matP 3542081..3542533 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACK2VW_RS18385 (ACK2VW_18385) ycbZ 3542719..3544479 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24130.97 Da        Isoelectric Point: 9.2180

>NTDB_id=968287 ACK2VW_RS18365 WP_000841914.1 3539240..3539869(-) (sxy/tfoX) [Escherichia coli O121 strain GTVSS-020]
MKSPSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=968287 ACK2VW_RS18365 WP_000841914.1 3539240..3539869(-) (sxy/tfoX) [Escherichia coli O121 strain GTVSS-020]
ATGAAAAGCCCCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment