Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKX38_RS01970 Genome accession   NZ_CP150258
Coordinates   368078..368527 (-) Length   149 a.a.
NCBI ID   WP_131227100.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0025     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363078..373527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX38_RS01935 (MKX38_01935) - 363348..364028 (-) 681 WP_339188441.1 amino acid ABC transporter permease -
  MKX38_RS01940 (MKX38_01940) - 364038..364901 (-) 864 WP_185184463.1 transporter substrate-binding domain-containing protein -
  MKX38_RS01945 (MKX38_01945) - 365063..365260 (+) 198 Protein_339 hypothetical protein -
  MKX38_RS01950 (MKX38_01950) - 365296..365616 (+) 321 Protein_340 RDD family protein -
  MKX38_RS01955 (MKX38_01955) - 365698..366030 (+) 333 WP_015252849.1 YckD family protein -
  MKX38_RS01960 (MKX38_01960) bglC 366183..367616 (+) 1434 WP_339188443.1 6-phospho-beta-glucosidase -
  MKX38_RS01965 (MKX38_01965) nin/comJ 367653..368051 (-) 399 WP_339188445.1 DNA-entry nuclease inhibitor Regulator
  MKX38_RS01970 (MKX38_01970) nucA/comI 368078..368527 (-) 450 WP_131227100.1 DNA-entry nuclease Machinery gene
  MKX38_RS01975 (MKX38_01975) tlpC 368695..370416 (-) 1722 WP_326248731.1 methyl-accepting chemotaxis protein TlpC -
  MKX38_RS01980 (MKX38_01980) hxlB 370527..371084 (-) 558 WP_069322365.1 6-phospho-3-hexuloisomerase -
  MKX38_RS01985 (MKX38_01985) hxlA 371090..371722 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  MKX38_RS01990 (MKX38_01990) hxlR 371954..372316 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16500.45 Da        Isoelectric Point: 4.5282

>NTDB_id=968275 MKX38_RS01970 WP_131227100.1 368078..368527(-) (nucA/comI) [Bacillus sp. FSL M8-0025]
MNITTDIIKTILLVIVIIAAATVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=968275 MKX38_RS01970 WP_131227100.1 368078..368527(-) (nucA/comI) [Bacillus sp. FSL M8-0025]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAACTGTCGGTCTGATAAA
AGGAGACTTTTTCTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment