Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MKY56_RS14385 Genome accession   NZ_CP150257
Coordinates   2740741..2741487 (-) Length   248 a.a.
NCBI ID   WP_247470622.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0054     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2735741..2746487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY56_RS14360 (MKY56_14360) mreC 2736147..2737019 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  MKY56_RS14365 (MKY56_14365) mreB 2737050..2738063 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MKY56_RS14370 (MKY56_14370) radC 2738155..2738850 (-) 696 WP_014480455.1 DNA repair protein RadC -
  MKY56_RS14375 (MKY56_14375) - 2738887..2739456 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  MKY56_RS14380 (MKY56_14380) spoIIB 2739609..2740607 (-) 999 WP_046381249.1 stage II sporulation protein SpoIIB -
  MKY56_RS14385 (MKY56_14385) comC 2740741..2741487 (-) 747 WP_247470622.1 A24 family peptidase Machinery gene
  MKY56_RS14390 (MKY56_14390) - 2741628..2742920 (-) 1293 WP_163189548.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MKY56_RS14395 (MKY56_14395) valS 2742980..2745622 (-) 2643 WP_046381251.1 valine--tRNA ligase -
  MKY56_RS14400 (MKY56_14400) - 2746070..2746261 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=968246 MKY56_RS14385 WP_247470622.1 2740741..2741487(-) (comC) [Bacillus sp. FSL M8-0054]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=968246 MKY56_RS14385 WP_247470622.1 2740741..2741487(-) (comC) [Bacillus sp. FSL M8-0054]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATAATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment