Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OO774_RS14300 Genome accession   NZ_AP026763
Coordinates   3061613..3062617 (+) Length   334 a.a.
NCBI ID   WP_264903267.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056613..3067617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS14280 (VspSTUT11_27000) rplC 3057120..3057749 (-) 630 WP_176290778.1 50S ribosomal protein L3 -
  OO774_RS14285 (VspSTUT11_27010) rpsJ 3057764..3058075 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  OO774_RS14290 (VspSTUT11_27020) rpmE 3058555..3058776 (-) 222 WP_005435070.1 50S ribosomal protein L31 -
  OO774_RS14295 (VspSTUT11_27030) priA 3059074..3061278 (+) 2205 WP_264903266.1 primosomal protein N' -
  OO774_RS14300 (VspSTUT11_27040) cytR 3061613..3062617 (+) 1005 WP_264903267.1 DNA-binding transcriptional regulator CytR Regulator
  OO774_RS14305 (VspSTUT11_27050) - 3062997..3063542 (+) 546 WP_264903268.1 SPOR domain-containing protein -
  OO774_RS14310 (VspSTUT11_27060) hslV 3063874..3064425 (+) 552 WP_264903269.1 ATP-dependent protease subunit HslV -
  OO774_RS14315 (VspSTUT11_27070) hslU 3064449..3065780 (+) 1332 WP_264903270.1 HslU--HslV peptidase ATPase subunit -
  OO774_RS14320 (VspSTUT11_27080) - 3066143..3067060 (+) 918 WP_264903271.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36770.28 Da        Isoelectric Point: 6.2453

>NTDB_id=96823 OO774_RS14300 WP_264903267.1 3061613..3062617(+) (cytR) [Vibrio sp. STUT-A11]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFEGGVKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIIRGSAAPPAR

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=96823 OO774_RS14300 WP_264903267.1 3061613..3062617(+) (cytR) [Vibrio sp. STUT-A11]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACCGCGACGGTATCTCGAGCTTTAATGAACCCGGAGAA
AGTCTCCTCTTCAACCCGAAAAAGAGTGGAAGACGCGGTACTCGAAGCAGGCTACTCACCCAATTCATTAGCGCGTAATT
TACGACGAAACGAATCAAAAACCATTGTTACGATCGTTCCTGACATCTGCGACCCTTATTTTTCTGAAATCATACGTGGT
ATTGAAGATGCGGCGATGGAACACGGCTACCTGGTTTTACTGGGAGACAGTGGCCAGCAGAAAAAACGCGAAAGTTCGTT
TGTAAACCTGGTATTTACCAAGCAAGCTGACGGAATGCTGCTACTGGGTACCGACTTACCGTTTGATGTGAGTAAACCAG
AGCAAAAGAACCTGCCACCCATGGTCATGGCTTGTGAATTTGCACCAGAGCTGGAATTGCCAACTGTACATATCGACAAC
CTGACTTCTGCCTTTGAAGCGGTTAACTATCTGACTCAGCTTGGTCACAAGCGAATAGCGCAAATTTCAGGCCCCGATAC
CGCGGTATTGTGCCAGTTCCGTCAGCAAGGTTACCAACAAGCTCTACGTCGAGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAATTCTCTTTTGAAGGTGGTGTAAAAGCAGTACGTAAACTGTTGGAGCTAGCGGAGCCACCAACCGCG
ATATTCTGCCACTGTGATACGATGGCAATCGGCGCTATTCAAGAAGCGAAAAAGCTCGGTTTCCGTGTCCCGCAAGATCT
GTCGGTAGTAGGGTTTGATGACATCAATTTTGCACAATACTGTGATCCACCGTTAACCACCATCTCTCAGCCTCGCTACG
AGATTGGCCGACAAGCGATGTTAATGATGTTAGAGCTTTTAAAAGGCCACGACGTACATTCTGGTTCTCGACTTCTGGAG
ACGAACCTGATTATACGCGGCAGTGCTGCGCCCCCAGCGAGATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

96.407

100

0.964
  cytR Vibrio cholerae C6706

88.922

100

0.889

Multiple sequence alignment