Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   MKY56_RS12420 Genome accession   NZ_CP150257
Coordinates   2399452..2400255 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0054     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2394452..2405255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY56_RS12395 (MKY56_12395) - 2395590..2396321 (-) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -
  MKY56_RS12400 (MKY56_12400) - 2396400..2397020 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  MKY56_RS12405 (MKY56_12405) - 2397040..2397336 (-) 297 WP_014480225.1 hypothetical protein -
  MKY56_RS12410 (MKY56_12410) - 2397644..2397796 (+) 153 WP_014480226.1 hypothetical protein -
  MKY56_RS12415 (MKY56_12415) - 2397869..2398987 (+) 1119 WP_128993136.1 NADH-dependent flavin oxidoreductase -
  MKY56_RS12420 (MKY56_12420) spo0A 2399452..2400255 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  MKY56_RS12425 (MKY56_12425) spoIVB 2400531..2401811 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  MKY56_RS12430 (MKY56_12430) recN 2401986..2403716 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  MKY56_RS12435 (MKY56_12435) argR 2403753..2404202 (-) 450 WP_003230265.1 arginine repressor ArgR -
  MKY56_RS12440 (MKY56_12440) - 2404300..2405145 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=968227 MKY56_RS12420 WP_003226427.1 2399452..2400255(-) (spo0A) [Bacillus sp. FSL M8-0054]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=968227 MKY56_RS12420 WP_003226427.1 2399452..2400255(-) (spo0A) [Bacillus sp. FSL M8-0054]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment