Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK2V7_RS02460 Genome accession   NZ_CP176676
Coordinates   446072..446623 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain GTVSS-018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 441072..451623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V7_RS02425 (ACK2V7_02425) - 441261..441686 (+) 426 WP_002874957.1 GNAT family N-acetyltransferase -
  ACK2V7_RS02430 (ACK2V7_02430) - 441751..442371 (+) 621 WP_052791331.1 NAD(P)H-dependent oxidoreductase -
  ACK2V7_RS02435 (ACK2V7_02435) - 442371..442976 (+) 606 WP_002874954.1 NAD(P)H-dependent oxidoreductase -
  ACK2V7_RS02440 (ACK2V7_02440) pgsA 443101..443637 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACK2V7_RS02445 (ACK2V7_02445) rseP 443634..444740 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  ACK2V7_RS02450 (ACK2V7_02450) - 444733..445599 (+) 867 WP_057036689.1 VirK family antimicrobial peptide resistance protein -
  ACK2V7_RS02455 (ACK2V7_02455) rpsF 445686..446063 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  ACK2V7_RS02460 (ACK2V7_02460) ssb 446072..446623 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  ACK2V7_RS02465 (ACK2V7_02465) rpsR 446634..446894 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACK2V7_RS02470 (ACK2V7_02470) lon 446955..449330 (-) 2376 WP_002868636.1 endopeptidase La -
  ACK2V7_RS02475 (ACK2V7_02475) - 449347..449994 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  ACK2V7_RS02480 (ACK2V7_02480) fliW 450155..450544 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACK2V7_RS02485 (ACK2V7_02485) proC 450544..451275 (+) 732 WP_002868635.1 pyrroline-5-carboxylate reductase Machinery gene
  ACK2V7_RS02490 (ACK2V7_02490) ctsT 451272..451574 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=968199 ACK2V7_RS02460 WP_002865738.1 446072..446623(+) (ssb) [Campylobacter jejuni strain GTVSS-018]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=968199 ACK2V7_RS02460 WP_002865738.1 446072..446623(+) (ssb) [Campylobacter jejuni strain GTVSS-018]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment