Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OO774_RS09445 Genome accession   NZ_AP026763
Coordinates   1995076..1996497 (+) Length   473 a.a.
NCBI ID   WP_264901827.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1990076..2001497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS09420 (VspSTUT11_17640) - 1990347..1990913 (+) 567 WP_264901819.1 BRCT domain-containing protein -
  OO774_RS09425 (VspSTUT11_17650) - 1990987..1991523 (-) 537 WP_264901820.1 hypothetical protein -
  OO774_RS09430 (VspSTUT11_17660) - 1991664..1992911 (-) 1248 WP_264901822.1 PIN domain-containing protein -
  OO774_RS09435 (VspSTUT11_17670) - 1993059..1993556 (-) 498 WP_264901823.1 superinfection exclusion B family protein -
  OO774_RS09440 (VspSTUT11_17680) - 1993697..1994893 (-) 1197 WP_264901825.1 site-specific integrase -
  OO774_RS09445 (VspSTUT11_17690) sbcB 1995076..1996497 (+) 1422 WP_264901827.1 exodeoxyribonuclease I Machinery gene
  OO774_RS09450 (VspSTUT11_17700) - 1996556..1996930 (+) 375 WP_264906098.1 CidA/LrgA family protein -
  OO774_RS09455 (VspSTUT11_17710) - 1996932..1997609 (+) 678 WP_014231625.1 LrgB family protein -
  OO774_RS09460 (VspSTUT11_17720) cdd 1997943..1998830 (+) 888 WP_264901832.1 cytidine deaminase -
  OO774_RS09465 (VspSTUT11_17730) purT 1998978..2000153 (+) 1176 WP_264901833.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OO774_RS09470 (VspSTUT11_17740) - 2000444..2001094 (-) 651 WP_264901836.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54450.61 Da        Isoelectric Point: 4.8198

>NTDB_id=96813 OO774_RS09445 WP_264901827.1 1995076..1996497(+) (sbcB) [Vibrio sp. STUT-A11]
MNNSEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=96813 OO774_RS09445 WP_264901827.1 1995076..1996497(+) (sbcB) [Vibrio sp. STUT-A11]
ATGAATAATTCAGAACAGCCGACCTTCTTCTTCTTTGACTACGAAACTTGGGGTACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTGATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCAGCATTGATTACCGGGATTACTCCGCAAAAGGCGGTTCAGGAAGGCCTGCCTGAGCCT
GAGTTCATTGCCAAAATTCATGCCGAGTTGTCTAAGCCAAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTCACGCGTTACACCTGTTACCGCAACTTTATAGATCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAGTGGCCAGAAAATGAAGATGGGTTTACC
AGCTTCAAACTCGAGCATCTGTCTGTTAAAAATGGTATTGAACACAGCAATGCGCACGATGCCATGGCTGACGTTATCGC
AACGATTGAGATGGCGAAGAAAGTGAAAGCTGCTCAGCCTAAGTTGTTTGATTACTTCTTCTCAATGCGTCAAAAACGTA
AGCTCAATGAATTGGTTGATATCGTCAACATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACCAGCTGGATTGTGCCTGTTGCCTGGCATCCGACAAACAACAACGCCGTTATCACGATTGATTTAGCCAAAGATCCACA
ACCAATCCTAGAGCTGTCTGCAGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCAATTCTGGCACCTGCGAAGACGCTGACCGCTGAAAACGCAGAGTCT
ATCGGTATTGACCGTCAACAGTGTTTGAACAACCTGGCTTTGTTACGTCAGCATCCAGAGATTCGTGAAAAACTGATCAG
CCTGTTTTCTGTTGAGCGTACATTTGAAAAAAGTGATGATGTGGATACTCAGCTTTACGATGGGTTCTTCTCACCTGCGG
ATCGCGCTGCAATGGATATTATTCGTGAAACCGATCCGAACAATTTGGCGGCGCTCGATATTGAATTCGATGACAAACGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTCGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment