Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACK2V4_RS11545 Genome accession   NZ_CP176646
Coordinates   2495635..2497014 (-) Length   459 a.a.
NCBI ID   WP_062854461.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GTVSS-031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2490635..2502014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V4_RS11530 (ACK2V4_11530) - 2491896..2492105 (-) 210 WP_005456575.1 DUF1127 domain-containing protein -
  ACK2V4_RS11535 (ACK2V4_11535) - 2492204..2493130 (+) 927 WP_062854462.1 LysR substrate-binding domain-containing protein -
  ACK2V4_RS11540 (ACK2V4_11540) fusA 2493331..2495418 (-) 2088 WP_029816480.1 elongation factor G -
  ACK2V4_RS11545 (ACK2V4_11545) radA/sms 2495635..2497014 (-) 1380 WP_062854461.1 DNA repair protein RadA Machinery gene
  ACK2V4_RS11550 (ACK2V4_11550) - 2497151..2499499 (+) 2349 WP_021822854.1 PilZ domain-containing protein -
  ACK2V4_RS11555 (ACK2V4_11555) serB 2499543..2500522 (-) 980 Protein_2249 phosphoserine phosphatase -
  ACK2V4_RS11560 (ACK2V4_11560) - 2500614..2501219 (+) 606 WP_045346569.1 YtjB family periplasmic protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49235.67 Da        Isoelectric Point: 7.4131

>NTDB_id=968070 ACK2V4_RS11545 WP_062854461.1 2495635..2497014(-) (radA/sms) [Vibrio parahaemolyticus strain GTVSS-031]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAIFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=968070 ACK2V4_RS11545 WP_062854461.1 2495635..2497014(-) (radA/sms) [Vibrio parahaemolyticus strain GTVSS-031]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGATCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGCTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGCGCGGCGATTTTGATAGGTGGTAACCCTGGCGCGGGTAA
GTCGACGTTGCTTCTTCAAACTATGTGTACGTTATCAGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATTCAGGTTATGCACGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACGCGATACGCAAAACAGAACAATGTTGCGA
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATAGTCGTTTCCGTACACTGCGCAGCCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
TGTGTTTGCGATGACGGGGCAGGGACTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTGTGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAGCGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTACTGCATAAGCA
CGGTGGTCTGCAAATGGCCGATCAAGACGTGTTTGTGAATGTAGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCTGATC
TTGCTTTAGTGATGGCGTTACTATCGAGCTTTCGTGATCGTCCGTTGCCAAAAGATGTAGTTGTATTTGGCGAAGTCGGT
TTGGCTGGTGAGATTCGTCCGGTACCAAGTGGTCAGGAGCGTTTGAACGAAGCATTCAAACACGGCTTCAAAAAGGCTAT
TGTCCCGGCGGCTAATATGCCAAAAGGGGGCATTCCGGGTATGCAAATTCACGGCGTTAAGAAGTTGTCTGAAGCTATTG
AGGCTTTTGACGAGCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.93

99.346

0.466
  radA Streptococcus mitis SK321

44.298

99.346

0.44
  radA Streptococcus pneumoniae Rx1

43.736

99.129

0.434
  radA Streptococcus pneumoniae D39

43.736

99.129

0.434
  radA Streptococcus pneumoniae R6

43.736

99.129

0.434
  radA Streptococcus pneumoniae TIGR4

43.736

99.129

0.434
  radA Streptococcus mitis NCTC 12261

43.736

99.129

0.434