Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO774_RS02725 Genome accession   NZ_AP026763
Coordinates   559996..560514 (+) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio sp. STUT-A11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 554996..565514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS02715 (VspSTUT11_04550) gshA 557728..559293 (+) 1566 WP_264904391.1 glutamate--cysteine ligase -
  OO774_RS02720 (VspSTUT11_04560) - 559321..559926 (+) 606 WP_264904392.1 hypothetical protein -
  OO774_RS02725 (VspSTUT11_04570) luxS 559996..560514 (+) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  OO774_RS02730 (VspSTUT11_04580) - 560605..561882 (-) 1278 WP_264904393.1 CNNM domain-containing protein -
  OO774_RS02735 (VspSTUT11_04590) - 562000..562794 (-) 795 WP_264904394.1 inner membrane protein YpjD -
  OO774_RS02740 (VspSTUT11_04600) ffh 563019..564401 (+) 1383 WP_264904395.1 signal recognition particle protein -
  OO774_RS02745 (VspSTUT11_04610) rpsP 564610..564858 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  OO774_RS02750 (VspSTUT11_04620) rimM 564889..565437 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=96803 OO774_RS02725 WP_014232962.1 559996..560514(+) (luxS) [Vibrio sp. STUT-A11]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=96803 OO774_RS02725 WP_014232962.1 559996..560514(+) (luxS) [Vibrio sp. STUT-A11]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCAGCTGTGCGAGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCTGAGAAAGGTATTC
ATACACTAGAACACCTTTACGCTGGCTTTATGCGTAGCCATCTAAACGGTGACAGTGTTGAGATTATTGATATTTCACCA
ATGGGGTGTCGCACTGGCTTCTACATGAGCCTGATCGGTACACCTTCAGAACAGCAAGTCGCAGACGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGCCAGAACAAAATTCCTGAGCTGAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCATTGGATGAAGCAAAACAAATTGCGAAAAACATTCTGGATGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
TTACCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment