Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MKY17_RS19345 Genome accession   NZ_CP150254
Coordinates   4015432..4017837 (-) Length   801 a.a.
NCBI ID   WP_339200351.1    Uniprot ID   -
Organism   Peribacillus sp. FSL P2-0133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4010432..4022837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY17_RS19320 (MKY17_19320) - 4011890..4012966 (-) 1077 WP_339200345.1 AI-2E family transporter -
  MKY17_RS19325 (MKY17_19325) - 4013195..4013410 (-) 216 WP_063233024.1 hypothetical protein -
  MKY17_RS19330 (MKY17_19330) - 4013400..4013864 (-) 465 WP_260397977.1 PRC-barrel domain-containing protein -
  MKY17_RS19335 (MKY17_19335) - 4014006..4014779 (-) 774 WP_144549914.1 TPM domain-containing protein -
  MKY17_RS19340 (MKY17_19340) - 4014779..4015345 (-) 567 WP_339200349.1 LemA family protein -
  MKY17_RS19345 (MKY17_19345) recD2 4015432..4017837 (-) 2406 WP_339200351.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MKY17_RS19350 (MKY17_19350) - 4017874..4018539 (-) 666 WP_339200353.1 tetratricopeptide repeat protein -
  MKY17_RS19355 (MKY17_19355) mnmA 4018662..4019777 (-) 1116 WP_339200355.1 tRNA 2-thiouridine(34) synthase MnmA -
  MKY17_RS19360 (MKY17_19360) - 4019807..4020952 (-) 1146 WP_339200357.1 cysteine desulfurase family protein -
  MKY17_RS19365 (MKY17_19365) - 4021013..4021432 (-) 420 WP_076365115.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90598.42 Da        Isoelectric Point: 4.7909

>NTDB_id=968025 MKY17_RS19345 WP_339200351.1 4015432..4017837(-) (recD2) [Peribacillus sp. FSL P2-0133]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNVNEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLQEILSEEEMPVVKEEVQQQSSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=968025 MKY17_RS19345 WP_339200351.1 4015432..4017837(-) (recD2) [Peribacillus sp. FSL P2-0133]
TTGAGCCAGCAAGACTCATTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAACATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATACCATGTAGAACATTTTCGCAAGGATCTCCCTCAATCCAAGGAAGGAATCGTCAGTTATTTATCCGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCTGAAAGCATTGTTGAGACACTGGGTGAAAAGGCAATTTCAAAAATTCTGGCTC
AGCCTTCGCTACTTGATGATATTCCGAAGCTATCCGGGGAAAAGGCAAAGGGACTCTATGATACATTGGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAGATCTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTTGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTAGGCATTTCCGGCAGCCATCCCGATCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCA
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAGGCTGTCAAACGTCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCGGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTATCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCTGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGATATTAACGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCCCCTACCGGCCGTGCAGCGAAACGCATGGCCGAATCCACGGGGCTCCCCGC
TGTTACGATCCATCGTTTGCTTGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTAATCATCGATGAGGTTTCCATGGTGGATACTTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTAGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAAGAAGATCGATCGTTCATTCGCTGCCAAACAGGTCAAATCCCCCAA
GTAATCGAGAAAGTGGTTGCTAATGCGAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCCCTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGTGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATCATGTCGATAAAGTAATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAACAGGACTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGTGAATTCCCGATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGTGGTGAAGAGGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCAAGAGATTTTGAGTGAAGAAGAAATGCCGGTGGTAAAGGAAGAGGTAC
AACAACAATCAAGTTATCTTGATATTCTCATGCATGCTGATCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-555)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.422

100

0.624

Multiple sequence alignment