Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACK2I5_RS22425 Genome accession   NZ_CP176645
Coordinates   4642862..4644106 (-) Length   414 a.a.
NCBI ID   WP_021528671.1    Uniprot ID   -
Organism   Escherichia coli strain SFAD3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4637862..4649106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I5_RS22410 - 4637973..4640735 (+) 2763 WP_021528673.1 glycosyltransferase -
  ACK2I5_RS22415 - 4640748..4641485 (+) 738 WP_021528672.1 DUF6270 domain-containing protein -
  ACK2I5_RS22420 - 4642125..4642799 (+) 675 WP_019842683.1 ABC transporter ATP-binding protein -
  ACK2I5_RS22425 kpsS 4642862..4644106 (-) 1245 WP_021528671.1 capsule biosynthesis protein Regulator
  ACK2I5_RS22430 - 4644141..4646168 (-) 2028 WP_021528670.1 capsular polysaccharide biosynthesis protein -
  ACK2I5_RS22435 kdsB 4646165..4646905 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK2I5_RS22440 - 4646915..4648591 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 49250.93 Da        Isoelectric Point: 10.0702

>NTDB_id=968008 ACK2I5_RS22425 WP_021528671.1 4642862..4644106(-) (kpsS) [Escherichia coli strain SFAD3]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERILYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQINAVYYGSADFGEDKTS
EKHFINIIKKIIHP

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=968008 ACK2I5_RS22425 WP_021528671.1 4642862..4644106(-) (kpsS) [Escherichia coli strain SFAD3]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAATCCTTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTAATGAAGACGCAGATTAATGCTGTTTATTATGGGAGTGCTGATTTTGGAGAAGATAAAACATCA
GAAAAACATTTTATCAATATAATCAAAAAAATCATACACCCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

93.961

0.374