Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   MKY10_RS13840 Genome accession   NZ_CP150253
Coordinates   2665325..2665603 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. FSL P4-0290     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 2660325..2670603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY10_RS13820 (MKY10_13820) ade 2660390..2662123 (-) 1734 WP_003245362.1 adenine deaminase -
  MKY10_RS13825 (MKY10_13825) ktrC 2662278..2662943 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  MKY10_RS13830 (MKY10_13830) - 2663006..2663833 (-) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  MKY10_RS13835 (MKY10_13835) kinC 2663849..2665135 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  MKY10_RS13840 (MKY10_13840) abrB 2665325..2665603 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  MKY10_RS13845 (MKY10_13845) mreBH 2665887..2666894 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  MKY10_RS13850 (MKY10_13850) - 2666995..2667129 (+) 135 WP_003238865.1 protein YkpC -
  MKY10_RS13855 (MKY10_13855) - 2667238..2668470 (+) 1233 WP_003232341.1 aminopeptidase -
  MKY10_RS13860 (MKY10_13860) - 2668504..2669415 (-) 912 WP_046380996.1 ketopantoate reductase family protein -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=967975 MKY10_RS13840 WP_003244728.1 2665325..2665603(-) (abrB) [Bacillus sp. FSL P4-0290]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=967975 MKY10_RS13840 WP_003244728.1 2665325..2665603(-) (abrB) [Bacillus sp. FSL P4-0290]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment