Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MKY10_RS10620 Genome accession   NZ_CP150253
Coordinates   1975323..1975943 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0290     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970323..1980943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY10_RS10600 (MKY10_10600) dnaD 1970626..1971324 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  MKY10_RS10605 (MKY10_10605) nth 1971343..1972002 (+) 660 WP_009967580.1 endonuclease III -
  MKY10_RS10610 (MKY10_10610) - 1971999..1972493 (+) 495 WP_029726783.1 YpoC family protein -
  MKY10_RS10615 (MKY10_10615) - 1972569..1975301 (-) 2733 WP_339226439.1 PBP1A family penicillin-binding protein -
  MKY10_RS10620 (MKY10_10620) recU 1975323..1975943 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MKY10_RS10625 (MKY10_10625) - 1975984..1976946 (+) 963 WP_015251830.1 DUF2515 domain-containing protein -
  MKY10_RS10630 (MKY10_10630) sspM 1976971..1977075 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MKY10_RS10635 (MKY10_10635) - 1977274..1977519 (+) 246 WP_015251831.1 YppD family protein -
  MKY10_RS10640 (MKY10_10640) - 1977565..1977936 (+) 372 WP_003246080.1 YppE family protein -
  MKY10_RS10645 (MKY10_10645) - 1977975..1978163 (-) 189 WP_003230690.1 YppF family protein -
  MKY10_RS10650 (MKY10_10650) - 1978351..1978728 (+) 378 WP_015251832.1 YppG family protein -
  MKY10_RS10655 (MKY10_10655) - 1978749..1979168 (-) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  MKY10_RS10660 (MKY10_10660) - 1979306..1979812 (+) 507 WP_044052678.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=967970 MKY10_RS10620 WP_004399067.1 1975323..1975943(-) (recU) [Bacillus sp. FSL P4-0290]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=967970 MKY10_RS10620 WP_004399067.1 1975323..1975943(-) (recU) [Bacillus sp. FSL P4-0290]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment