Detailed information    

insolico Bioinformatically predicted

Overview


Name   nucA/comI   Type   Machinery gene
Locus tag   MKY10_RS08845 Genome accession   NZ_CP150253
Coordinates   1664263..1664673 (+) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   A0A6I4D881
Organism   Bacillus sp. FSL P4-0290     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1615303..1669307 1664263..1664673 within 0


Gene organization within MGE regions


Location: 1615303..1669307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY10_RS08495 (MKY10_08495) - 1615303..1615695 (-) 393 Protein_1612 sigma-70 family RNA polymerase sigma factor -
  MKY10_RS08500 (MKY10_08500) - 1615701..1616219 (-) 519 WP_015714342.1 ImmA/IrrE family metallo-endopeptidase -
  MKY10_RS08505 (MKY10_08505) - 1616488..1617024 (+) 537 WP_309520477.1 AAA family ATPase -
  MKY10_RS08510 (MKY10_08510) - 1617380..1617547 (+) 168 WP_003229900.1 hypothetical protein -
  MKY10_RS08515 (MKY10_08515) sknR 1617814..1618164 (-) 351 WP_004398704.1 transcriptional regulator SknR -
  MKY10_RS08520 (MKY10_08520) - 1618341..1618571 (+) 231 WP_004398958.1 helix-turn-helix transcriptional regulator -
  MKY10_RS08525 (MKY10_08525) - 1618601..1618741 (+) 141 WP_003229902.1 hypothetical protein -
  MKY10_RS08530 (MKY10_08530) - 1618815..1619384 (+) 570 WP_004398626.1 helix-turn-helix transcriptional regulator -
  MKY10_RS08535 (MKY10_08535) - 1619381..1619638 (+) 258 WP_003245994.1 YqaH family protein -
  MKY10_RS08540 (MKY10_08540) - 1619635..1619808 (+) 174 WP_119123069.1 hypothetical protein -
  MKY10_RS08545 (MKY10_08545) - 1619768..1619962 (+) 195 WP_003229905.1 hypothetical protein -
  MKY10_RS08550 (MKY10_08550) - 1620068..1621027 (+) 960 WP_004398673.1 YqaJ viral recombinase family protein -
  MKY10_RS08555 (MKY10_08555) - 1621030..1621884 (+) 855 WP_003229907.1 recombinase RecT -
  MKY10_RS08560 (MKY10_08560) - 1621960..1622637 (+) 678 WP_116362964.1 DnaD domain protein -
  MKY10_RS08565 (MKY10_08565) - 1622519..1623460 (+) 942 WP_075058863.1 ATP-binding protein -
  MKY10_RS08570 (MKY10_08570) - 1623451..1623600 (+) 150 WP_003229910.1 hypothetical protein -
  MKY10_RS08575 (MKY10_08575) - 1623696..1624124 (+) 429 WP_009967809.1 RusA family crossover junction endodeoxyribonuclease -
  MKY10_RS08580 (MKY10_08580) - 1624206..1624412 (+) 207 WP_003229912.1 XtrA/YqaO family protein -
  MKY10_RS08585 (MKY10_08585) - 1624486..1625415 (-) 930 WP_003229913.1 hypothetical protein -
  MKY10_RS08590 (MKY10_08590) - 1625613..1626068 (+) 456 WP_004398775.1 hypothetical protein -
  MKY10_RS08595 (MKY10_08595) - 1626212..1626676 (+) 465 WP_004398685.1 hypothetical protein -
  MKY10_RS08600 (MKY10_08600) terS 1626744..1627463 (+) 720 WP_003229916.1 phage terminase small subunit -
  MKY10_RS08605 (MKY10_08605) - 1627456..1628751 (+) 1296 WP_003229917.1 PBSX family phage terminase large subunit -
  MKY10_RS08610 (MKY10_08610) - 1628755..1630287 (+) 1533 WP_004398894.1 phage portal protein -
  MKY10_RS08615 (MKY10_08615) - 1630284..1631201 (+) 918 WP_004398748.1 phage head morphogenesis protein -
  MKY10_RS08620 (MKY10_08620) - 1631242..1631895 (+) 654 WP_003229920.1 hypothetical protein -
  MKY10_RS08625 (MKY10_08625) - 1631928..1632896 (+) 969 WP_003229921.1 XkdF-like putative serine protease domain-containing protein -
  MKY10_RS08630 (MKY10_08630) - 1632915..1633850 (+) 936 WP_003229922.1 phage major capsid protein -
  MKY10_RS08635 (MKY10_08635) - 1633861..1634172 (+) 312 WP_003229923.1 YqbF domain-containing protein -
  MKY10_RS08640 (MKY10_08640) - 1634176..1634571 (+) 396 WP_004398566.1 DUF3199 family protein -
  MKY10_RS08645 (MKY10_08645) - 1634568..1634930 (+) 363 WP_003229925.1 YqbH/XkdH family protein -
  MKY10_RS08650 (MKY10_08650) - 1634927..1635430 (+) 504 WP_003246050.1 HK97 gp10 family phage protein -
  MKY10_RS08655 (MKY10_08655) - 1635443..1635880 (+) 438 WP_003229927.1 DUF6838 family protein -
  MKY10_RS08660 (MKY10_08660) - 1635877..1636068 (+) 192 WP_010886574.1 hypothetical protein -
  MKY10_RS08665 (MKY10_08665) - 1636069..1637469 (+) 1401 WP_003229929.1 phage tail sheath family protein -
  MKY10_RS08670 (MKY10_08670) - 1637472..1637915 (+) 444 WP_003229930.1 phage tail tube protein -
  MKY10_RS08675 (MKY10_08675) bsrH 1638169..1638258 (-) 90 WP_075058862.1 type I toxin-antitoxin system toxin BsrH -
  MKY10_RS08680 (MKY10_08680) txpA 1638638..1638817 (-) 180 WP_004398662.1 type I toxin-antitoxin system toxin TxpA -
  MKY10_RS08685 (MKY10_08685) - 1638963..1639412 (+) 450 WP_032722171.1 phage portal protein -
  MKY10_RS08690 (MKY10_08690) - 1639454..1639591 (+) 138 WP_021480099.1 hypothetical protein -
  MKY10_RS08695 (MKY10_08695) - 1639594..1644351 (+) 4758 WP_339226395.1 phage tail tape measure protein -
  MKY10_RS08700 (MKY10_08700) - 1644344..1645003 (+) 660 WP_032722169.1 LysM peptidoglycan-binding domain-containing protein -
  MKY10_RS08705 (MKY10_08705) - 1645016..1645996 (+) 981 WP_032722168.1 hypothetical protein -
  MKY10_RS08710 (MKY10_08710) - 1645993..1646259 (+) 267 WP_032722167.1 DUF2577 family protein -
  MKY10_RS08715 (MKY10_08715) - 1646272..1646697 (+) 426 WP_032722166.1 DUF2634 domain-containing protein -
  MKY10_RS08720 (MKY10_08720) - 1646690..1647736 (+) 1047 WP_032722165.1 baseplate J/gp47 family protein -
  MKY10_RS08725 (MKY10_08725) - 1647720..1648298 (+) 579 WP_032722164.1 YmfQ family protein -
  MKY10_RS08730 (MKY10_08730) - 1648295..1648567 (+) 273 WP_032722163.1 hypothetical protein -
  MKY10_RS08735 (MKY10_08735) - 1648571..1649671 (+) 1101 WP_032722161.1 pyocin knob domain-containing protein -
  MKY10_RS08740 (MKY10_08740) - 1649681..1650016 (+) 336 WP_009967793.1 XkdW family protein -
  MKY10_RS08745 (MKY10_08745) - 1650013..1650177 (+) 165 WP_003229944.1 XkdX family protein -
  MKY10_RS08750 (MKY10_08750) - 1650265..1651158 (+) 894 WP_032722160.1 hypothetical protein -
  MKY10_RS08755 (MKY10_08755) - 1651204..1651626 (+) 423 WP_017697460.1 holin family protein -
  MKY10_RS08760 (MKY10_08760) cwlA 1651671..1652489 (+) 819 WP_017697459.1 N-acetylmuramoyl-L-alanine amidase CwlA -
  MKY10_RS08765 (MKY10_08765) - 1652654..1653133 (+) 480 WP_004399085.1 hypothetical protein -
  MKY10_RS08770 (MKY10_08770) - 1653149..1653511 (+) 363 WP_003229947.1 hypothetical protein -
  MKY10_RS08775 (MKY10_08775) - 1653508..1653654 (-) 147 WP_009967791.1 hypothetical protein -
  MKY10_RS08780 (MKY10_08780) yqcF 1653772..1654350 (-) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  MKY10_RS08785 (MKY10_08785) yqcG 1654365..1655960 (-) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  MKY10_RS08790 (MKY10_08790) - 1656330..1656488 (-) 159 WP_003245945.1 hypothetical protein -
  MKY10_RS08795 (MKY10_08795) phrE 1656598..1656732 (-) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  MKY10_RS08800 (MKY10_08800) rapE 1656722..1657849 (-) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE -
  MKY10_RS08805 (MKY10_08805) - 1658292..1659056 (+) 765 WP_017696291.1 YqcI/YcgG family protein -
  MKY10_RS08810 (MKY10_08810) arsR 1659428..1659745 (+) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -
  MKY10_RS08815 (MKY10_08815) - 1659804..1660244 (+) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  MKY10_RS08820 (MKY10_08820) acr3 1660267..1661307 (+) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  MKY10_RS08825 (MKY10_08825) - 1661319..1661738 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  MKY10_RS08830 (MKY10_08830) - 1662093..1662271 (+) 179 Protein_1679 hypothetical protein -
  MKY10_RS08835 (MKY10_08835) spoIVCA 1662229..1663689 (+) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  MKY10_RS08840 (MKY10_08840) - 1663720..1664067 (-) 348 Protein_1681 sigma-70 family RNA polymerase sigma factor -
  MKY10_RS08845 (MKY10_08845) nucA/comI 1664263..1664673 (+) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  MKY10_RS08850 (MKY10_08850) - 1664706..1665428 (-) 723 WP_010886572.1 hypothetical protein -
  MKY10_RS08855 (MKY10_08855) gnd 1665680..1666573 (+) 894 WP_015251670.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  MKY10_RS08860 (MKY10_08860) - 1666592..1667218 (-) 627 WP_015251671.1 TVP38/TMEM64 family protein -
  MKY10_RS08865 (MKY10_08865) cwlH 1667405..1668157 (+) 753 WP_015251672.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  MKY10_RS08870 (MKY10_08870) - 1668409..1669140 (+) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -

Sequence


Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=967954 MKY10_RS08845 WP_009967785.1 1664263..1664673(+) (nucA/comI) [Bacillus sp. FSL P4-0290]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=967954 MKY10_RS08845 WP_009967785.1 1664263..1664673(+) (nucA/comI) [Bacillus sp. FSL P4-0290]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCTGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGCTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGAGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTACGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6I4D881

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529


Multiple sequence alignment