Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NYE20_RS15050 Genome accession   NZ_CP150252
Coordinates   2813668..2814414 (-) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2808668..2819414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS15025 (NYE20_15025) mreC 2809074..2809946 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NYE20_RS15030 (NYE20_15030) mreB 2809977..2810990 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NYE20_RS15035 (NYE20_15035) radC 2811082..2811777 (-) 696 WP_021480240.1 DNA repair protein RadC -
  NYE20_RS15040 (NYE20_15040) - 2811814..2812383 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  NYE20_RS15045 (NYE20_15045) spoIIB 2812536..2813534 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  NYE20_RS15050 (NYE20_15050) comC 2813668..2814414 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  NYE20_RS15055 (NYE20_15055) - 2814555..2815847 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NYE20_RS15060 (NYE20_15060) valS 2815907..2818549 (-) 2643 WP_161621714.1 valine--tRNA ligase -
  NYE20_RS15065 (NYE20_15065) - 2818997..2819188 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=967898 NYE20_RS15050 WP_021480242.1 2813668..2814414(-) (comC) [Bacillus sp. FSL R5-0416]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=967898 NYE20_RS15050 WP_021480242.1 2813668..2814414(-) (comC) [Bacillus sp. FSL R5-0416]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment