Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE20_RS12330 Genome accession   NZ_CP150252
Coordinates   2340528..2341148 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335528..2346148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS12290 (NYE20_12290) - 2336659..2337165 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  NYE20_RS12295 (NYE20_12295) - 2337303..2337722 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  NYE20_RS12300 (NYE20_12300) - 2337743..2338120 (-) 378 WP_014477159.1 YppG family protein -
  NYE20_RS12305 (NYE20_12305) - 2338308..2338496 (+) 189 WP_003230690.1 YppF family protein -
  NYE20_RS12310 (NYE20_12310) - 2338535..2338906 (-) 372 WP_003246080.1 YppE family protein -
  NYE20_RS12315 (NYE20_12315) - 2338952..2339197 (-) 246 WP_038828603.1 YppD family protein -
  NYE20_RS12320 (NYE20_12320) sspM 2339396..2339500 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NYE20_RS12325 (NYE20_12325) - 2339525..2340487 (-) 963 WP_064671082.1 DUF2515 domain-containing protein -
  NYE20_RS12330 (NYE20_12330) recU 2340528..2341148 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NYE20_RS12335 (NYE20_12335) - 2341170..2343929 (+) 2760 WP_339183106.1 PBP1A family penicillin-binding protein -
  NYE20_RS12340 (NYE20_12340) - 2344005..2344499 (-) 495 WP_120028311.1 YpoC family protein -
  NYE20_RS12345 (NYE20_12345) nth 2344496..2345155 (-) 660 WP_009967580.1 endonuclease III -
  NYE20_RS12350 (NYE20_12350) dnaD 2345174..2345872 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=967878 NYE20_RS12330 WP_004399067.1 2340528..2341148(+) (recU) [Bacillus sp. FSL R5-0416]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=967878 NYE20_RS12330 WP_004399067.1 2340528..2341148(+) (recU) [Bacillus sp. FSL R5-0416]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment