Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYE20_RS09020 Genome accession   NZ_CP150252
Coordinates   1695368..1696261 (+) Length   297 a.a.
NCBI ID   WP_038828237.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1690368..1701261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS09000 (NYE20_09000) - 1691038..1692768 (+) 1731 WP_153529743.1 hypothetical protein -
  NYE20_RS09005 (NYE20_09005) - 1692765..1693046 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  NYE20_RS09010 (NYE20_09010) sucC 1693219..1694376 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NYE20_RS09015 (NYE20_09015) sucD 1694405..1695307 (+) 903 WP_161621572.1 succinate--CoA ligase subunit alpha -
  NYE20_RS09020 (NYE20_09020) dprA 1695368..1696261 (+) 894 WP_038828237.1 DNA-processing protein DprA Machinery gene
  NYE20_RS09025 (NYE20_09025) topA 1696449..1698524 (+) 2076 WP_161621573.1 type I DNA topoisomerase -
  NYE20_RS09030 (NYE20_09030) trmFO 1698600..1699907 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE20_RS09035 (NYE20_09035) xerC 1699975..1700889 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32860.20 Da        Isoelectric Point: 10.0054

>NTDB_id=967873 NYE20_RS09020 WP_038828237.1 1695368..1696261(+) (dprA) [Bacillus sp. FSL R5-0416]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLAAHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=967873 NYE20_RS09020 WP_038828237.1 1695368..1696261(+) (dprA) [Bacillus sp. FSL R5-0416]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGCTCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment