Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NYE20_RS05695 Genome accession   NZ_CP150252
Coordinates   1093377..1093955 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088377..1098955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS05675 (NYE20_05675) hemAT 1088888..1090186 (-) 1299 WP_064671445.1 heme-based aerotactic transducer HemAT -
  NYE20_RS05680 (NYE20_05680) - 1090325..1091854 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  NYE20_RS05685 (NYE20_05685) - 1091966..1092823 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  NYE20_RS05690 (NYE20_05690) - 1092851..1093084 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NYE20_RS05695 (NYE20_05695) comK 1093377..1093955 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  NYE20_RS05700 (NYE20_05700) - 1094002..1094901 (-) 900 WP_161621463.1 SDR family oxidoreductase -
  NYE20_RS05705 (NYE20_05705) - 1095118..1095387 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  NYE20_RS05710 (NYE20_05710) - 1095431..1096900 (-) 1470 WP_339184747.1 sodium:solute symporter -
  NYE20_RS05715 (NYE20_05715) - 1096897..1097097 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NYE20_RS05720 (NYE20_05720) - 1097296..1097667 (-) 372 WP_014476361.1 hypothetical protein -
  NYE20_RS05725 (NYE20_05725) - 1097819..1098442 (+) 624 WP_249851149.1 TVP38/TMEM64 family protein -
  NYE20_RS05730 (NYE20_05730) lepB 1098444..1098950 (+) 507 WP_043857244.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=967858 NYE20_RS05695 WP_029317573.1 1093377..1093955(+) (comK) [Bacillus sp. FSL R5-0416]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=967858 NYE20_RS05695 WP_029317573.1 1093377..1093955(+) (comK) [Bacillus sp. FSL R5-0416]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATTTCCTATAATTCGTTCGAAAACCAGGTATACCGGACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGGCAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment