Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CTR2_RS26170 Genome accession   NZ_AP026738
Coordinates   5618964..5620565 (-) Length   533 a.a.
NCBI ID   WP_087079799.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain R2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5613964..5625565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTR2_RS26150 (CTR2_R51050) - 5614420..5614758 (+) 339 WP_053283100.1 tRNA-binding protein -
  CTR2_RS26155 (CTR2_R51060) - 5614816..5616048 (+) 1233 WP_087079801.1 DUF711 family protein -
  CTR2_RS26160 (CTR2_R51070) - 5616182..5617105 (+) 924 WP_087084401.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  CTR2_RS26165 (CTR2_R51080) - 5617371..5618960 (+) 1590 WP_254913194.1 S41 family peptidase -
  CTR2_RS26170 (CTR2_R51090) rpoN/rpoN1 5618964..5620565 (-) 1602 WP_087079799.1 RNA polymerase factor sigma-54 Machinery gene
  CTR2_RS26175 (CTR2_R51100) lptB 5620711..5621493 (-) 783 WP_034355232.1 LPS export ABC transporter ATP-binding protein -
  CTR2_RS26180 (CTR2_R51110) lptA 5621490..5622146 (-) 657 WP_003068194.1 lipopolysaccharide transport periplasmic protein LptA -
  CTR2_RS26185 (CTR2_R51120) - 5622277..5622927 (-) 651 WP_087079797.1 thiol:disulfide interchange protein DsbA/DsbL -
  CTR2_RS26190 (CTR2_R51130) - 5623040..5623744 (-) 705 WP_087079795.1 SPOR domain-containing protein -
  CTR2_RS26195 (CTR2_R51140) argS 5623846..5625555 (-) 1710 WP_087079793.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 59087.37 Da        Isoelectric Point: 4.6632

>NTDB_id=96785 CTR2_RS26170 WP_087079799.1 5618964..5620565(-) (rpoN/rpoN1) [Comamonas thiooxydans strain R2]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLVDNPFLERAGDEAETTGDAPADVAASVNEYSTSDGIHAE
KEASQAQSATETVAEAPNPETPETLNWEADGMDGQDGEWGGESSSEWDTPSASSSTRNRDGDDETDAIDLAREHQSLTDF
LHRQALSLHLGAADMAALRFLIESLSDDGYLEDSLQELAQSLAGDDLEEREELEQHFAIALKLLQSLEPVGVGARDLAEC
LQLQLRDLIRTAEDEGTTEAHMNRLLLAQAICAQPMDLLARRDLRKLTSLCGAREEQLREAMALIARLEPRPGRRFVDVE
RHIVVPDVIVRPVRAGSGRADFSVQLNPEVMPRLRVHDIYASVLRRHKNSDGHAALQQQLQEARWFIKNIQQRFDTILRV
SEAIVERQKNFFVHGELAMRPLVLRDIADTLGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGSASSTAVRAL
IKQFVDAEDARKPLSDAKLADMLKEQGIECARRTVAKYREQLKIPTTTLRKAL

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=96785 CTR2_RS26170 WP_087079799.1 5618964..5620565(-) (rpoN/rpoN1) [Comamonas thiooxydans strain R2]
ATGAAGCCAGGTCTCTCGCTACGCGTTTCGCAGCATTTATCGCTGACGCCGCAGCTGCAGCAATCCATTCAGCTGCTGCA
GCTCTCCACTCTGGAGCTGGCGCAGGAAGTCGAGCAGATGCTGGTCGACAACCCTTTTCTGGAGCGTGCGGGCGATGAGG
CCGAAACTACGGGTGATGCTCCTGCAGATGTAGCTGCTAGCGTTAATGAATACAGCACTTCAGATGGAATTCATGCTGAA
AAGGAAGCATCGCAAGCGCAATCAGCTACTGAAACAGTAGCGGAAGCACCAAACCCCGAAACCCCTGAAACGCTGAACTG
GGAGGCCGACGGCATGGACGGCCAGGACGGGGAATGGGGCGGCGAATCCAGCAGCGAGTGGGATACCCCCTCGGCCAGCA
GCTCCACGCGCAACCGCGATGGCGATGACGAAACCGATGCCATCGATCTGGCGCGCGAGCACCAGAGCCTGACCGACTTT
CTCCATCGTCAGGCGCTGAGCCTGCATCTGGGCGCGGCGGACATGGCGGCACTGCGCTTTCTCATCGAGTCGCTCAGTGA
CGACGGCTATCTCGAGGATTCCCTGCAGGAGCTGGCGCAGAGCCTGGCCGGCGACGACCTCGAAGAGCGCGAGGAGCTGG
AGCAGCACTTTGCCATTGCGCTGAAGCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGTGATCTGGCCGAGTGC
CTGCAGCTGCAGCTGCGCGATCTCATCCGCACCGCCGAGGATGAGGGCACGACCGAGGCGCATATGAACCGGCTGCTGCT
GGCGCAGGCCATCTGCGCGCAGCCCATGGACCTGCTGGCGCGGCGCGATCTGCGCAAGCTCACCAGCCTGTGCGGCGCGC
GCGAGGAGCAACTGCGCGAGGCCATGGCCCTGATCGCCAGGCTGGAGCCGCGTCCGGGGCGCCGCTTTGTCGACGTGGAA
CGCCATATCGTGGTGCCCGATGTCATCGTGCGCCCGGTGCGGGCCGGCTCGGGCCGGGCGGACTTTTCCGTGCAGCTCAA
CCCCGAGGTCATGCCGCGTCTGCGCGTGCATGACATCTATGCCAGCGTGCTGCGCCGCCACAAGAACAGCGACGGCCATG
CGGCGCTGCAGCAGCAACTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCTTGCGGGTC
TCCGAAGCCATCGTGGAGCGGCAGAAGAACTTCTTTGTGCATGGTGAGCTGGCCATGCGACCGCTGGTGCTGCGCGATAT
CGCAGACACGCTGGGCCTGCACGAGTCCACCATCAGCCGTGTGACCACCGCCAAGTACATGGCCACGCCCCAGGGCACCT
TCGAGCTCAAGTATTTCTTCGGTTCGGGCCTGGGCACGGAAACCGGCGGCAGCGCCTCCAGCACGGCCGTGCGTGCGCTG
ATCAAGCAGTTTGTCGATGCCGAAGATGCCAGGAAGCCGCTATCGGACGCCAAGCTGGCCGATATGCTCAAGGAGCAGGG
CATCGAGTGCGCGCGTCGCACCGTCGCCAAATACCGCGAGCAGCTCAAGATACCGACGACCACGCTGCGCAAGGCGCTCT
AA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(375-531)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(150-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.46

100

0.514

Multiple sequence alignment