Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NYE53_RS13895 Genome accession   NZ_CP150251
Coordinates   2692648..2693394 (-) Length   248 a.a.
NCBI ID   WP_187957069.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2687648..2698394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS13870 (NYE53_13870) mreC 2688054..2688926 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NYE53_RS13875 (NYE53_13875) mreB 2688957..2689970 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NYE53_RS13880 (NYE53_13880) radC 2690062..2690757 (-) 696 WP_021480240.1 DNA repair protein RadC -
  NYE53_RS13885 (NYE53_13885) - 2690794..2691363 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  NYE53_RS13890 (NYE53_13890) spoIIB 2691516..2692514 (-) 999 WP_339245190.1 stage II sporulation protein SpoIIB -
  NYE53_RS13895 (NYE53_13895) comC 2692648..2693394 (-) 747 WP_187957069.1 A24 family peptidase Machinery gene
  NYE53_RS13900 (NYE53_13900) - 2693535..2694827 (-) 1293 WP_160221718.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NYE53_RS13905 (NYE53_13905) valS 2694887..2697529 (-) 2643 WP_251187692.1 valine--tRNA ligase -
  NYE53_RS13910 (NYE53_13910) - 2697977..2698168 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26406.98 Da        Isoelectric Point: 9.7803

>NTDB_id=967818 NYE53_RS13895 WP_187957069.1 2692648..2693394(-) (comC) [Bacillus sp. FSL R5-0523]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=967818 NYE53_RS13895 WP_187957069.1 2692648..2693394(-) (comC) [Bacillus sp. FSL R5-0523]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98

Multiple sequence alignment