Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NYE53_RS12600 Genome accession   NZ_CP150251
Coordinates   2473861..2474628 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2468861..2479628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS12580 (NYE53_12580) - 2469035..2469847 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  NYE53_RS12585 (NYE53_12585) ccpN 2469873..2470511 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  NYE53_RS12590 (NYE53_12590) glyS 2470644..2472683 (-) 2040 WP_339244972.1 glycine--tRNA ligase subunit beta -
  NYE53_RS12595 (NYE53_12595) glyQ 2472676..2473563 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  NYE53_RS12600 (NYE53_12600) recO 2473861..2474628 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  NYE53_RS12605 (NYE53_12605) - 2474665..2474808 (-) 144 WP_003230053.1 YqzL family protein -
  NYE53_RS12610 (NYE53_12610) era 2474956..2475861 (-) 906 WP_003230051.1 GTPase Era -
  NYE53_RS12615 (NYE53_12615) - 2475842..2476252 (-) 411 WP_339244976.1 cytidine deaminase -
  NYE53_RS12620 (NYE53_12620) - 2476371..2476742 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  NYE53_RS12625 (NYE53_12625) ybeY 2476723..2477196 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  NYE53_RS12630 (NYE53_12630) pgpH 2477197..2479332 (-) 2136 WP_339244977.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=967810 NYE53_RS12600 WP_015384118.1 2473861..2474628(-) (recO) [Bacillus sp. FSL R5-0523]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=967810 NYE53_RS12600 WP_015384118.1 2473861..2474628(-) (recO) [Bacillus sp. FSL R5-0523]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTTCATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment