Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NYE53_RS12080 Genome accession   NZ_CP150251
Coordinates   2386494..2388224 (-) Length   576 a.a.
NCBI ID   WP_029317928.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2381494..2393224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS12055 (NYE53_12055) - 2381547..2381843 (-) 297 WP_086344612.1 hypothetical protein -
  NYE53_RS12060 (NYE53_12060) - 2382151..2382303 (+) 153 WP_014480226.1 hypothetical protein -
  NYE53_RS12065 (NYE53_12065) - 2382376..2383494 (+) 1119 WP_339244918.1 NADH-dependent flavin oxidoreductase -
  NYE53_RS12070 (NYE53_12070) spo0A 2383960..2384763 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NYE53_RS12075 (NYE53_12075) spoIVB 2385039..2386319 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  NYE53_RS12080 (NYE53_12080) recN 2386494..2388224 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  NYE53_RS12085 (NYE53_12085) argR 2388261..2388710 (-) 450 WP_015384067.1 arginine repressor ArgR -
  NYE53_RS12090 (NYE53_12090) - 2388808..2389653 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  NYE53_RS12095 (NYE53_12095) dxs 2389650..2391551 (-) 1902 WP_003245985.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NYE53_RS12100 (NYE53_12100) - 2391726..2392616 (-) 891 WP_339244922.1 polyprenyl synthetase family protein -
  NYE53_RS12105 (NYE53_12105) - 2392606..2392860 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64540.41 Da        Isoelectric Point: 4.7697

>NTDB_id=967800 NYE53_RS12080 WP_029317928.1 2386494..2388224(-) (recN) [Bacillus sp. FSL R5-0523]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKMSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=967800 NYE53_RS12080 WP_029317928.1 2386494..2388224(-) (recN) [Bacillus sp. FSL R5-0523]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAGAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATAAACGAACCGCTGAAAAAAAT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.826

100

0.998

Multiple sequence alignment