Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CTR2_RS23395 Genome accession   NZ_AP026738
Coordinates   5020300..5020704 (-) Length   134 a.a.
NCBI ID   WP_003071158.1    Uniprot ID   A0A5S4T294
Organism   Comamonas thiooxydans strain R2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5015300..5025704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTR2_RS23380 (CTR2_R45590) - 5017132..5019375 (-) 2244 WP_087080569.1 methyl-accepting chemotaxis protein -
  CTR2_RS23385 (CTR2_R45600) - 5019395..5019922 (-) 528 WP_003071161.1 chemotaxis protein CheW -
  CTR2_RS23390 (CTR2_R45610) - 5019938..5020300 (-) 363 WP_003071159.1 PleD family two-component system response regulator -
  CTR2_RS23395 (CTR2_R45620) pilG 5020300..5020704 (-) 405 WP_003071158.1 PleD family two-component system response regulator Regulator
  CTR2_RS23400 - 5020755..5020907 (-) 153 WP_034399566.1 rubredoxin -
  CTR2_RS23405 (CTR2_R45630) - 5021023..5021991 (+) 969 WP_087080567.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CTR2_RS23410 (CTR2_R45640) hemL 5021975..5023279 (+) 1305 WP_034353945.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CTR2_RS23415 (CTR2_R45650) - 5023442..5025214 (+) 1773 WP_217896224.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14667.90 Da        Isoelectric Point: 6.9230

>NTDB_id=96780 CTR2_RS23395 WP_003071158.1 5020300..5020704(-) (pilG) [Comamonas thiooxydans strain R2]
MTASGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=96780 CTR2_RS23395 WP_003071158.1 5020300..5020704(-) (pilG) [Comamonas thiooxydans strain R2]
GTGACAGCATCTGGTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAACACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTTGCCGACGATGGCTTCGATGCCCTGTCCAAGGTCAATGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAACTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGTGTATTCGACAAGGCTCGCGGCCGCATGGTGGGCTGCCAAGACTA
TCTGACCAAACCATTTACCAAAGATCAATTGCTGCAAGCCGTACAACAATTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T294

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.621

86.567

0.507

Multiple sequence alignment