Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE53_RS11090 Genome accession   NZ_CP150251
Coordinates   2207849..2208469 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2202849..2213469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS11050 (NYE53_11050) - 2203036..2203455 (+) 420 WP_339244743.1 Hsp20/alpha crystallin family protein -
  NYE53_RS11055 (NYE53_11055) - 2203476..2203853 (-) 378 WP_339244746.1 YppG family protein -
  NYE53_RS11060 (NYE53_11060) - 2204041..2204229 (+) 189 WP_003230690.1 YppF family protein -
  NYE53_RS11065 (NYE53_11065) - 2204385..2205737 (+) 1353 WP_339244749.1 IS1182 family transposase -
  NYE53_RS11070 (NYE53_11070) - 2205856..2206227 (-) 372 WP_021481525.1 YppE family protein -
  NYE53_RS11075 (NYE53_11075) - 2206273..2206518 (-) 246 WP_021481526.1 DUF5446 family protein -
  NYE53_RS11080 (NYE53_11080) sspM 2206717..2206821 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NYE53_RS11085 (NYE53_11085) - 2206846..2207808 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  NYE53_RS11090 (NYE53_11090) recU 2207849..2208469 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NYE53_RS11095 (NYE53_11095) - 2208491..2211241 (+) 2751 WP_339244753.1 PBP1A family penicillin-binding protein -
  NYE53_RS11100 (NYE53_11100) - 2211317..2211811 (-) 495 WP_009967579.1 YpoC family protein -
  NYE53_RS11105 (NYE53_11105) nth 2211808..2212467 (-) 660 WP_339244757.1 endonuclease III -
  NYE53_RS11110 (NYE53_11110) dnaD 2212486..2213184 (-) 699 WP_339244759.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=967798 NYE53_RS11090 WP_004399067.1 2207849..2208469(+) (recU) [Bacillus sp. FSL R5-0523]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=967798 NYE53_RS11090 WP_004399067.1 2207849..2208469(+) (recU) [Bacillus sp. FSL R5-0523]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment