Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CTR2_RS00515 Genome accession   NZ_AP026738
Coordinates   115977..117362 (-) Length   461 a.a.
NCBI ID   WP_012836620.1    Uniprot ID   A0A5S4SXP0
Organism   Comamonas thiooxydans strain R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110977..122362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTR2_RS00485 (CTR2_R00970) - 111007..111771 (+) 765 WP_087085517.1 glycosyltransferase family 25 protein -
  CTR2_RS00490 (CTR2_R00980) - 111761..112894 (-) 1134 WP_087085516.1 glycosyltransferase -
  CTR2_RS00495 (CTR2_R00990) - 112957..113922 (+) 966 WP_176391768.1 glycosyltransferase family 32 protein -
  CTR2_RS00500 (CTR2_R01000) - 113969..114178 (-) 210 WP_003059801.1 zinc-finger domain-containing protein -
  CTR2_RS00505 (CTR2_R01010) - 114321..115259 (-) 939 WP_087085515.1 branched-chain amino acid transaminase -
  CTR2_RS00510 (CTR2_R01020) - 115341..115796 (-) 456 WP_087085514.1 glycerate kinase -
  CTR2_RS00515 (CTR2_R01030) radA 115977..117362 (-) 1386 WP_012836620.1 DNA repair protein RadA Machinery gene
  CTR2_RS00525 (CTR2_R01040) - 117784..119091 (-) 1308 WP_012836621.1 Glu/Leu/Phe/Val dehydrogenase -
  CTR2_RS00530 (CTR2_R01050) - 119301..120224 (+) 924 WP_087085513.1 fumarylacetoacetate hydrolase family protein -
  CTR2_RS00535 (CTR2_R01060) - 120377..121486 (-) 1110 WP_176391757.1 PPK2 family polyphosphate kinase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48073.39 Da        Isoelectric Point: 7.6670

>NTDB_id=96770 CTR2_RS00515 WP_012836620.1 115977..117362(-) (radA) [Comamonas thiooxydans strain R2]
MAKEKTTFTCNACGGTSPRWLGKCPGCGAWNTLVETVADSASGGKNRLSQPQGYAGLANAQPVTPLSAIEAQDVARTPSG
IEELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALHRIGLPTLYVTGEESGAQVALRSRRLGLDNSQVNVLAEIQL
EKILATVEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITIILVGHVTKDGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAARRLSVGLDRDRLAMLLAVLNRHAGVACADQDVFVNAVGGVRINEPAADLAVMLAITSSLRGKSLPKGFIAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTIAVVPKANAPKKPIAGLTIHAVERVDEAINIVRGIG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=96770 CTR2_RS00515 WP_012836620.1 115977..117362(-) (radA) [Comamonas thiooxydans strain R2]
ATGGCCAAAGAGAAAACCACTTTCACCTGCAACGCCTGTGGCGGCACCAGTCCGCGCTGGCTGGGCAAATGCCCGGGCTG
CGGCGCCTGGAACACCCTGGTCGAGACCGTGGCCGACTCCGCCTCGGGCGGCAAGAATCGCCTGAGCCAGCCTCAGGGCT
ATGCAGGTCTGGCCAATGCTCAGCCCGTCACCCCGCTGTCGGCCATCGAGGCCCAGGATGTGGCGCGCACCCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCGTGGTCGAAGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGAATAGG
TAAGTCCACACTTCTTTTGCAGGCCATGGATGCATTGCACCGCATCGGCCTGCCCACGCTCTATGTAACGGGCGAGGAAA
GCGGCGCCCAGGTGGCGCTGCGCTCGCGCCGGCTCGGGCTGGACAACAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTT
GAGAAAATCCTGGCCACCGTGGAGGCCACCCAGCCCGCCGTGGTGGTGATCGACTCGATCCAGACCGTGTATTCGGACCA
GCTCTCCTCGGCCCCTGGCTCCGTGGCCCAGGTGCGCGAATGCGCGGCCCATCTGACGCGCGCGGCCAAGACCACGGGCA
TCACCATCATTCTGGTGGGCCATGTGACCAAGGACGGCGCGCTGGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACA
GTGCTCTACTTCGAAGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGTGCCGTCAACGA
GATCGGCGTCTTCGCGATGACGGAAAAAGGCCTCAAGGGCGTGACCAACCCCAGCGCCATCTTTCTGAGCCAGCACAGCG
AGCCCGTGCCCGGCAGCTGCGTGCTGGTGACACTCGAAGGCACGCGCCCCATGCTGGTGGAAATCCAGGCCCTGGTGGAC
CAGGGCGGCCCGGCCGCGCGCCGCCTCTCCGTCGGCTTGGACCGCGACCGGCTGGCCATGCTTCTGGCCGTGCTCAACCG
CCATGCGGGCGTGGCCTGCGCCGACCAGGATGTCTTCGTCAATGCCGTGGGCGGCGTGCGCATCAATGAGCCTGCAGCTG
ACCTGGCGGTGATGTTGGCGATCACTTCCAGTTTGCGCGGCAAGTCGCTGCCCAAGGGTTTTATCGCGTTTGGCGAGGTC
GGTCTGGCCGGCGAGGTGCGTCCCGCCCCTCGCGGTCAGGAGCGTCTCAAGGAAGCAGCAAAGTTGGGATTCACTATCGC
CGTGGTTCCCAAGGCCAATGCCCCCAAGAAGCCCATCGCCGGCCTGACCATCCATGCCGTGGAGCGCGTTGATGAAGCCA
TCAACATCGTGCGCGGCATTGGTTGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-455)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.02

99.566

0.488
  radA Streptococcus mitis NCTC 12261

47.598

99.349

0.473
  radA Streptococcus pneumoniae D39

48.438

97.18

0.471
  radA Streptococcus pneumoniae TIGR4

48.438

97.18

0.471
  radA Streptococcus pneumoniae R6

48.438

97.18

0.471
  radA Streptococcus pneumoniae Rx1

48.438

97.18

0.471
  radA Streptococcus mitis SK321

49.425

94.36

0.466

Multiple sequence alignment