Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACKZ7S_RS04130 Genome accession   NZ_CP176565
Coordinates   826064..827146 (+) Length   360 a.a.
NCBI ID   WP_162636082.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0353     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 821064..832146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7S_RS04110 (ACKZ7S_04110) - 821434..822504 (-) 1071 WP_409481539.1 GGDEF domain-containing protein -
  ACKZ7S_RS04115 (ACKZ7S_04115) - 822822..823877 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACKZ7S_RS04120 (ACKZ7S_04120) - 824049..824690 (-) 642 WP_000192947.1 YigZ family protein -
  ACKZ7S_RS04125 (ACKZ7S_04125) fakB1 824834..825700 (+) 867 WP_162636081.1 fatty acid kinase binding subunit FakB1 -
  ACKZ7S_RS04130 (ACKZ7S_04130) comFA 826064..827146 (+) 1083 WP_162636082.1 DEAD/DEAH box helicase Machinery gene
  ACKZ7S_RS04135 (ACKZ7S_04135) - 827139..827813 (+) 675 WP_162636083.1 ComF family protein -
  ACKZ7S_RS04140 (ACKZ7S_04140) hpf 827874..828446 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACKZ7S_RS04145 (ACKZ7S_04145) secA 828860..831391 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACKZ7S_RS04150 (ACKZ7S_04150) - 831433..831531 (+) 99 Protein_806 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41952.39 Da        Isoelectric Point: 9.6802

>NTDB_id=967570 ACKZ7S_RS04130 WP_162636082.1 826064..827146(+) (comFA) [Staphylococcus aureus strain V0353]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVAEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=967570 ACKZ7S_RS04130 WP_162636082.1 826064..827146(+) (comFA) [Staphylococcus aureus strain V0353]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGCAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369