Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACKZ7S_RS04045 Genome accession   NZ_CP176565
Coordinates   809535..810506 (+) Length   323 a.a.
NCBI ID   WP_162636077.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0353     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 804535..815506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7S_RS04025 (ACKZ7S_04025) nrdI 805443..805841 (+) 399 WP_162636089.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  ACKZ7S_RS04030 (ACKZ7S_04030) nrdE 805804..807909 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  ACKZ7S_RS04035 (ACKZ7S_04035) nrdF 808027..808998 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  ACKZ7S_RS04040 (ACKZ7S_04040) - 809341..809460 (+) 120 WP_162636076.1 hypothetical protein -
  ACKZ7S_RS04045 (ACKZ7S_04045) ceuB 809535..810506 (+) 972 WP_162636077.1 ABC transporter permease Machinery gene
  ACKZ7S_RS04050 (ACKZ7S_04050) - 810493..811449 (+) 957 WP_162636078.1 iron chelate uptake ABC transporter family permease subunit -
  ACKZ7S_RS04055 (ACKZ7S_04055) - 811446..812207 (+) 762 WP_000616872.1 ABC transporter ATP-binding protein -
  ACKZ7S_RS04060 (ACKZ7S_04060) - 812326..813354 (+) 1029 WP_000754450.1 siderophore ABC transporter substrate-binding protein -
  ACKZ7S_RS04065 (ACKZ7S_04065) - 813615..813929 (-) 315 WP_162636079.1 CHY zinc finger protein -
  ACKZ7S_RS04070 (ACKZ7S_04070) murB 813947..814870 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35572.09 Da        Isoelectric Point: 10.1194

>NTDB_id=967569 ACKZ7S_RS04045 WP_162636077.1 809535..810506(+) (ceuB) [Staphylococcus aureus strain V0353]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFSTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=967569 ACKZ7S_RS04045 WP_162636077.1 809535..810506(+) (ceuB) [Staphylococcus aureus strain V0353]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTTCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACGACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATATTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471