Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACKZ7T_RS03975 Genome accession   NZ_CP176564
Coordinates   815122..816204 (+) Length   360 a.a.
NCBI ID   WP_250415293.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0641     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 810122..821204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7T_RS03955 (ACKZ7T_03955) - 810492..811562 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  ACKZ7T_RS03960 (ACKZ7T_03960) - 811880..812935 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACKZ7T_RS03965 (ACKZ7T_03965) - 813107..813748 (-) 642 WP_063650538.1 YigZ family protein -
  ACKZ7T_RS03970 (ACKZ7T_03970) fakB1 813892..814758 (+) 867 WP_409481183.1 fatty acid kinase binding subunit FakB1 -
  ACKZ7T_RS03975 (ACKZ7T_03975) comFA 815122..816204 (+) 1083 WP_250415293.1 DEAD/DEAH box helicase Machinery gene
  ACKZ7T_RS03980 (ACKZ7T_03980) - 816197..816871 (+) 675 WP_250415292.1 ComF family protein -
  ACKZ7T_RS03985 (ACKZ7T_03985) hpf 816932..817504 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACKZ7T_RS03990 (ACKZ7T_03990) secA 817918..820449 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACKZ7T_RS03995 (ACKZ7T_03995) - 820491..820589 (+) 99 Protein_775 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42061.61 Da        Isoelectric Point: 9.8307

>NTDB_id=967482 ACKZ7T_RS03975 WP_250415293.1 815122..816204(+) (comFA) [Staphylococcus aureus strain V0641]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKRHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=967482 ACKZ7T_RS03975 WP_250415293.1 815122..816204(+) (comFA) [Staphylococcus aureus strain V0641]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGACATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACGGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACAACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGTCGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367