Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ACJX3V_RS18805 Genome accession   NZ_CP176523
Coordinates   3788731..3789420 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3783731..3794420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS18785 - 3784635..3784982 (-) 348 WP_004393256.1 YxeA family protein -
  ACJX3V_RS18790 yxdM 3784996..3786864 (-) 1869 WP_048367841.1 ABC transporter permease YxdM -
  ACJX3V_RS18795 yxdL 3786839..3787612 (-) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  ACJX3V_RS18800 yxdK 3787757..3788734 (-) 978 WP_004393249.1 two-component system sensor histidine kinase YxdK -
  ACJX3V_RS18805 braR 3788731..3789420 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  ACJX3V_RS18810 iolJ 3789528..3790400 (-) 873 WP_032858437.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  ACJX3V_RS18815 iolI 3790403..3791245 (-) 843 WP_004393239.1 2-keto-myo-inositol isomerase -
  ACJX3V_RS18820 - 3791333..3792202 (-) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  ACJX3V_RS18825 - 3792221..3793255 (-) 1035 WP_004393236.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=967460 ACJX3V_RS18805 WP_004393241.1 3788731..3789420(-) (braR) [Bacillus amyloliquefaciens strain MEPW12]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=967460 ACJX3V_RS18805 WP_004393241.1 3788731..3789420(-) (braR) [Bacillus amyloliquefaciens strain MEPW12]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393