Detailed information NTG0967447

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: ACJX3V_RS16260
• Genome accession: NZ_CP176523
• Coordinates: 3292382..3293692 (-)
• Length: 436 a.a.
• NCBI ID: WP_003151571.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MEPW12
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3287382..3298692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJX3V_RS16240	-	3287625..3288341 (-)	717	WP_046560070.1	(Fe-S)-binding protein	-
ACJX3V_RS16245	-	3288522..3289712 (-)	1191	WP_046560071.1	PLP-dependent aminotransferase family protein	-
ACJX3V_RS16250	-	3289743..3290462 (-)	720	WP_046341432.1	FadR/GntR family transcriptional regulator	-
ACJX3V_RS16255	lutP	3290668..3292344 (+)	1677	WP_014305865.1	L-lactate permease LutP	-
ACJX3V_RS16260	rpoN/rpoN1	3292382..3293692 (-)	1311	WP_003151571.1	RNA polymerase factor sigma-54	Machinery gene
ACJX3V_RS16265	yvfG	3293770..3293988 (+)	219	WP_003151570.1	protein YvfG	-
ACJX3V_RS16270	-	3294002..3294967 (-)	966	WP_024085827.1	polysaccharide pyruvyl transferase family protein	-
ACJX3V_RS16275	-	3294946..3296118 (-)	1173	WP_003151568.1	DegT/DnrJ/EryC1/StrS family aminotransferase	-
ACJX3V_RS16280	-	3296123..3296770 (-)	648	WP_046560072.1	acetyltransferase	-
ACJX3V_RS16285	-	3296767..3297375 (-)	609	WP_046560073.1	sugar transferase	-

Sequence

Protein

• Length: 436 a.a.
• Molecular weight: 49957.00 Da
• Isoelectric Point: 9.3840

>NTDB_id=967447 ACJX3V_RS16260 WP_003151571.1 3292382..3293692(-) (rpoN/rpoN1) [Bacillus amyloliquefaciens strain MEPW12]
MDIKLQQTQMLKPQLTQELKQAITLLGYNSAELAGYIDELSLENPLIERKETDTPPLSYHKTNKNRMKERDGSQQIRLTR
KTLQDSLKQQALDMKLSDDEKKIFNYLIHSLDSNGYLKEDIPAAADHVSASQEETEAVLKKLQSLEPAGIGARSLQECIL
LQLRRLPERNEQAEWIAEAYFELFARKNWKALTLKTGIPLKDIQDIADMISALDPRPGLRYAHEEPGFYVEPDIFITVKN
GIIQARLNSRSFPDIQLHAHYQPLLSAAGCRDTKNYLSAKYQEWRWLNRALSQRKQTITRIIGVLTERQESFFLTGKSGM
QPLTLREVAETLELHESTISRAIKGKYVQTPYGLYEMKTFFSAKAESSGDGGASNYAVKAHLEALVRKEDKKKPFSDQKL
ADLLHEQYDIRISRRTVAKYRDQLNIPPSSARKRYS

Nucleotide

• Length: 1311 bp

>NTDB_id=967447 ACJX3V_RS16260 WP_003151571.1 3292382..3293692(-) (rpoN/rpoN1) [Bacillus amyloliquefaciens strain MEPW12]
ATGGATATCAAACTTCAGCAAACACAAATGTTAAAGCCTCAATTAACGCAAGAGCTTAAACAGGCCATCACATTACTCGG
ATACAATTCCGCGGAACTGGCCGGATATATTGATGAGCTCTCACTGGAAAACCCTCTGATTGAACGAAAGGAAACAGACA
CGCCGCCACTATCTTACCATAAAACAAATAAAAACAGGATGAAAGAACGGGACGGAAGCCAGCAGATCAGACTTACCCGC
AAAACGCTGCAGGATTCGCTCAAACAGCAAGCCTTAGACATGAAGCTGTCCGATGATGAGAAAAAAATTTTCAATTATCT
GATACATTCATTGGATTCAAACGGTTATTTAAAAGAGGACATACCAGCCGCCGCCGACCATGTATCCGCTTCACAAGAGG
AGACGGAAGCGGTTCTGAAAAAGCTTCAATCCCTTGAGCCCGCGGGAATCGGCGCCCGGTCTTTGCAGGAATGCATCCTT
CTTCAGCTCCGCCGTCTGCCCGAGCGGAACGAACAGGCGGAATGGATTGCCGAAGCCTATTTTGAGCTATTTGCAAGAAA
GAATTGGAAAGCGCTTACACTGAAAACGGGTATTCCGCTTAAAGACATTCAGGACATCGCTGACATGATCAGCGCGCTTG
ATCCGAGGCCGGGGCTCCGTTATGCGCATGAGGAGCCGGGTTTTTACGTAGAACCGGATATTTTCATCACGGTGAAAAAC
GGCATCATTCAAGCGCGGCTCAACAGCCGTTCGTTTCCTGACATCCAGCTTCATGCCCATTATCAGCCGCTCCTGTCAGC
CGCCGGGTGCCGTGACACGAAAAATTATCTGTCGGCAAAATATCAGGAATGGCGCTGGCTGAACCGGGCTTTGTCGCAAA
GAAAACAAACGATCACGAGAATTATCGGCGTCCTGACTGAACGGCAGGAATCCTTTTTTCTCACAGGAAAAAGCGGAATG
CAGCCGCTGACCCTAAGAGAGGTGGCGGAAACGCTGGAGCTCCACGAATCAACGATCAGCCGGGCCATCAAAGGGAAGTA
CGTTCAGACGCCGTACGGACTGTATGAAATGAAAACATTTTTCTCGGCGAAAGCTGAATCATCGGGGGACGGCGGCGCCT
CCAATTATGCCGTAAAAGCGCATCTGGAAGCATTGGTCCGTAAAGAAGATAAAAAGAAACCTTTTTCAGACCAAAAGCTT
GCCGATCTGCTGCATGAACAATATGACATCCGAATCTCAAGGCGCACCGTCGCCAAATACCGTGACCAATTAAATATTCC
GCCGTCATCGGCGAGAAAACGGTACAGCTGA

Domains

Predicted by InterProScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (275-434)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (4-48)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (77-261)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	32.47	100	0.374