Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACJX3V_RS14070 Genome accession   NZ_CP176523
Coordinates   2881744..2882448 (-) Length   234 a.a.
NCBI ID   WP_015387834.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2876744..2887448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS14050 cysK 2876754..2877725 (+) 972 WP_020954278.1 cysteine synthase A -
  ACJX3V_RS14055 pepV 2877763..2879154 (-) 1392 WP_088037454.1 dipeptidase PepV -
  ACJX3V_RS14060 - 2879250..2880554 (+) 1305 WP_014305604.1 NCS2 family permease -
  ACJX3V_RS14065 - 2880587..2881747 (-) 1161 WP_095318445.1 ABC transporter permease -
  ACJX3V_RS14070 pptA 2881744..2882448 (-) 705 WP_015387834.1 ABC transporter ATP-binding protein Regulator
  ACJX3V_RS14075 - 2882731..2882952 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACJX3V_RS14080 - 2883080..2883799 (-) 720 WP_015387833.1 pseudouridine synthase -
  ACJX3V_RS14085 - 2883856..2885493 (-) 1638 WP_003152313.1 polysaccharide biosynthesis protein -
  ACJX3V_RS14090 - 2885699..2886964 (+) 1266 WP_003152311.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25744.46 Da        Isoelectric Point: 4.4916

>NTDB_id=967435 ACJX3V_RS14070 WP_015387834.1 2881744..2882448(-) (pptA) [Bacillus amyloliquefaciens strain MEPW12]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAGRLLEEFSLTSVKHDLPSGFSKGMQQKMMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=967435 ACJX3V_RS14070 WP_015387834.1 2881744..2882448(-) (pptA) [Bacillus amyloliquefaciens strain MEPW12]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCCGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGTACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATTGAAGGCGGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGGCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCACCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGGGAAGAGTGCCGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGA
TGATGCTTATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGAGGCGCGGGGATTTTGATGTGCACGCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453