Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   ACJX3V_RS08545 Genome accession   NZ_CP176523
Coordinates   1689777..1691654 (+) Length   625 a.a.
NCBI ID   WP_003154106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1684777..1696654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS08530 ymcA 1685827..1686258 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACJX3V_RS08535 cotE 1686512..1687057 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  ACJX3V_RS08540 hexA 1687176..1689761 (+) 2586 WP_048367486.1 DNA mismatch repair protein MutS Machinery gene
  ACJX3V_RS08545 hexB 1689777..1691654 (+) 1878 WP_003154106.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACJX3V_RS08550 - 1692054..1692263 (-) 210 WP_048367263.1 hypothetical protein -
  ACJX3V_RS08555 - 1693332..1694009 (+) 678 WP_003154103.1 MBL fold metallo-hydrolase -
  ACJX3V_RS08560 fabD 1694324..1695193 (+) 870 WP_024085317.1 ACP S-malonyltransferase -
  ACJX3V_RS08565 - 1695330..1696304 (+) 975 WP_032857379.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70230.35 Da        Isoelectric Point: 5.7702

>NTDB_id=967393 ACJX3V_RS08545 WP_003154106.1 1689777..1691654(+) (hexB) [Bacillus amyloliquefaciens strain MEPW12]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKTAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIEEESLPDEAGHG
VPPELGMPVTEAPVSDIPEPEEEADSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQV
EPEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKK
LREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=967393 ACJX3V_RS08545 WP_003154106.1 1689777..1691654(+) (hexB) [Bacillus amyloliquefaciens strain MEPW12]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCGAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATTGACGCAAACAGCACAGTCATTGAGATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGAGAGGGGGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAGC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACGCCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATTGCTCTTGCGCATCCGGAAGTATCCATCCG
TCTGCGCCATCAGGGGAAAAATCTGTTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATCGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGCAGATACATTAAGAATTTTCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTCCATCCGTCGAAGCTTGAAGTTCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAAACAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCGGAGCCGGTCATAGAAGAAGAGTCCCTGCCGGATGAAGCAGGTCACGGA
GTGCCGCCGGAGCTCGGCATGCCGGTAACGGAAGCGCCTGTTTCCGATATTCCGGAGCCTGAAGAGGAGGCTGACTCTGA
AGAAATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACGTATATTTTAGCCCAAAACGAAA
ACGGCTTGTATATCATTGACCAGCATGCGGCGCAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTC
GAGCCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTATGCGGCAAATGAAGCGCTGATCATTGATCAGCATCA
GCATGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGT
TTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAA
CTCAGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGAGAAATGACGAAATCAA
AGCGCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGTA
CGTATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)

MutL C terminal dimerisation domain (MutL_C)

(440-581)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.522

100

0.482