Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACJX3V_RS08185 Genome accession   NZ_CP176523
Coordinates   1611837..1612199 (+) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606837..1617199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS08155 flgD 1607740..1608180 (+) 441 WP_003154247.1 flagellar hook assembly protein FlgD -
  ACJX3V_RS08160 flgG 1608205..1608981 (+) 777 WP_003154244.1 flagellar basal body rod protein FlgG -
  ACJX3V_RS08165 - 1609021..1609236 (+) 216 WP_043867090.1 flagellar FlbD family protein -
  ACJX3V_RS08170 fliL 1609233..1609652 (+) 420 WP_003154241.1 flagellar basal body-associated protein FliL -
  ACJX3V_RS08175 fliM 1609686..1610684 (+) 999 WP_003154240.1 flagellar motor switch protein FliM -
  ACJX3V_RS08180 fliY 1610674..1611810 (+) 1137 WP_003154239.1 flagellar motor switch phosphatase FliY -
  ACJX3V_RS08185 pilH 1611837..1612199 (+) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  ACJX3V_RS08190 fliZ 1612214..1612867 (+) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  ACJX3V_RS08195 fliP 1612860..1613525 (+) 666 WP_003154235.1 flagellar type III secretion system pore protein FliP -
  ACJX3V_RS08200 fliQ 1613540..1613809 (+) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  ACJX3V_RS08205 fliR 1613816..1614595 (+) 780 WP_003154233.1 flagellar biosynthetic protein FliR -
  ACJX3V_RS08210 flhB 1614595..1615674 (+) 1080 WP_003154232.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=967387 ACJX3V_RS08185 WP_003154238.1 1611837..1612199(+) (pilH) [Bacillus amyloliquefaciens strain MEPW12]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=967387 ACJX3V_RS08185 WP_003154238.1 1611837..1612199(+) (pilH) [Bacillus amyloliquefaciens strain MEPW12]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTCGAAAAATTCAAAGAGCATTCCCCCGACCTAGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTCTAAAGGAAATTAAACAGATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAGGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383