Detailed information NTG0967370

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACJX3V_RS06235
• Genome accession: NZ_CP176523
• Coordinates: 1195028..1196164 (+)
• Length: 378 a.a.
• NCBI ID: WP_088005367.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MEPW12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1190028..1201164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJX3V_RS06215	-	1190474..1191919 (+)	1446	WP_046559506.1	tagaturonate reductase	-
ACJX3V_RS06220	-	1191916..1193409 (+)	1494	WP_046559507.1	UxaA family hydrolase	-
ACJX3V_RS06225	-	1193443..1194207 (-)	765	WP_003154887.1	sulfite exporter TauE/SafE family protein	-
ACJX3V_RS06230	-	1194356..1194823 (-)	468	WP_014304838.1	DinB family protein	-
ACJX3V_RS06235	rapC	1195028..1196164 (+)	1137	WP_088005367.1	Rap family tetratricopeptide repeat protein	Regulator
ACJX3V_RS06240	-	1196154..1196288 (+)	135	WP_003154881.1	PhrA family phosphatase inhibitor	-
ACJX3V_RS06245	-	1196431..1197384 (+)	954	WP_046559508.1	N-acetylmuramoyl-L-alanine amidase	-
ACJX3V_RS06250	-	1197422..1197799 (-)	378	WP_003154878.1	PH domain-containing protein	-
ACJX3V_RS06255	-	1197909..1198514 (+)	606	WP_032858666.1	poly-gamma-glutamate hydrolase family protein	-
ACJX3V_RS06260	-	1198669..1199259 (-)	591	WP_003154873.1	ImmA/IrrE family metallo-endopeptidase	-
ACJX3V_RS06265	xre	1199408..1199746 (-)	339	WP_003154871.1	HTH-type transcriptional regulator Xre	-
ACJX3V_RS06270	-	1199938..1200117 (+)	180	WP_003154869.1	hypothetical protein	-
ACJX3V_RS06275	-	1200107..1200934 (+)	828	WP_046559509.1	FaeA/PapI family transcriptional regulator	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 45092.33 Da
• Isoelectric Point: 4.9175

>NTDB_id=967370 ACJX3V_RS06235 WP_088005367.1 1195028..1196164(+) (rapC) [Bacillus amyloliquefaciens strain MEPW12]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
RTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=967370 ACJX3V_RS06235 WP_088005367.1 1195028..1196164(+) (rapC) [Bacillus amyloliquefaciens strain MEPW12]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATTGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGCGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATATCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTCAATCTGTTCCAATTTTTGCATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CGCACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-67)

• Tetratricopeptide repeat (TPR_12) (221-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.681	99.471	0.444
rapF	Bacillus subtilis subsp. subtilis str. 168	42.48	100	0.426