Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY95_RS29665 Genome accession   NZ_CP150242
Coordinates   6441269..6442636 (-) Length   455 a.a.
NCBI ID   WP_339195754.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL P4-0176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6436269..6447636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY95_RS29635 (MKY95_29635) ispF 6436370..6436846 (-) 477 WP_339195750.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY95_RS29640 (MKY95_29640) ispD 6436843..6437538 (-) 696 WP_338707132.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY95_RS29645 (MKY95_29645) - 6437621..6438706 (-) 1086 WP_047841132.1 PIN/TRAM domain-containing protein -
  MKY95_RS29650 (MKY95_29650) - 6438880..6439275 (+) 396 WP_017692049.1 hypothetical protein -
  MKY95_RS29655 (MKY95_29655) pssA 6439402..6440133 (-) 732 WP_017692048.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MKY95_RS29660 (MKY95_29660) disA 6440179..6441255 (-) 1077 WP_036607144.1 DNA integrity scanning diadenylate cyclase DisA -
  MKY95_RS29665 (MKY95_29665) radA 6441269..6442636 (-) 1368 WP_339195754.1 DNA repair protein RadA Machinery gene
  MKY95_RS29670 (MKY95_29670) - 6442909..6445371 (-) 2463 WP_036607223.1 ATP-dependent Clp protease ATP-binding subunit -
  MKY95_RS29675 (MKY95_29675) - 6445557..6446627 (-) 1071 WP_339195757.1 protein arginine kinase -
  MKY95_RS29680 (MKY95_29680) - 6446656..6447180 (-) 525 WP_036607138.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49473.13 Da        Isoelectric Point: 7.2036

>NTDB_id=967368 MKY95_RS29665 WP_339195754.1 6441269..6442636(-) (radA) [Paenibacillus sp. FSL P4-0176]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRKSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSAELYVLCETNMERVEEA
VDQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGVDLHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=967368 MKY95_RS29665 WP_339195754.1 6441269..6442636(-) (radA) [Paenibacillus sp. FSL P4-0176]
GTGGCCAAAGTTAAAACCAAGTTTCAATGTACGGAATGCGGCTATGAAGCCCCCAAGTGGTACGGTAAGTGTCCGGGTTG
TCAGTCATGGAATTCAATGGTGGAAGAAACAGAGACGGTGGTCAAAACACAAGGGAGAAAATCTCCTCTGTTTGACAGTA
AAGATAAACCGCTTCCTATCATAGATATAGATAGCGGTCAGGAACCGCGTGTACAGACTGGAATCGGAGAGTTGAACCGG
GTATTGGGTGGCGGAATCGTTCCGGGTTCACTCGTTCTGGTGGGCGGAGATCCGGGTATTGGTAAATCAACGTTGATGTT
GCAGACGTCTCATGCTTTGACGCATTCGGGTTTGCGTGTGTTATATGTTTCCGGTGAGGAATCAGTCAAGCAAACCAAAT
TGCGGGCAGACCGTCTCGGGGCACTCTCTGCCGAGTTGTATGTACTGTGTGAAACGAATATGGAACGTGTAGAGGAAGCG
GTGGATCAGATCCAGCCGCATTTTCTGGTCATCGACTCCATTCAGACGGTATATCTTCCCGAAGTTACCAGTGCGCCGGG
TAGTGTAGCACAGGTAAGGGAATGTACGTCAAGGTTCATGCGGATTGCCAAAGGCAGAGGCATTGCAACGGTTCTTGTGG
GGCATGTTACCAAAGAAGGTGCTATTGCCGGTCCACGTATGTTAGAACATATGGTGGATTGCGTGCTTTATTTTGAAGGA
GAACGGCATCATACGTATCGCCTGTTGCGTGCGGTGAAGAACCGTTTTGGTTCCACCAATGAGATTGGTATTTTTGAAAT
GGGCGAGGATGGACTTCGTGAGGTGGGCAATCCGTCCGAACTCTTTTTGTCGGAACGTCCACTGGGTGTAGCAGGTTCAA
CGGTAGTTGCCAGTATGGAGGGGACACGTCCTCTGCTCGTGGAATTACAGGCGTTGATCTCAACCACCCATTTCCCTTCT
CCCCGCCGTATGGCAACAGGGGTAGATCTGCATCGATTAAATCTGATCATTGCAGTGCTGGAGAAACGGATGGGGATGTT
TTTACAGACCCAGGATGCATACTTAAATGTAGCTGGTGGAGTACGGTTGGATGAGCCCGCTGTAGACTTGGCGGTTGCTG
TCAGCATTGCATCCAGTTTGAGAGATGTACCGACCAAGCCAGACGACGTCATCTTTGGCGAGATCGGTCTGACAGGTGAA
GTTCGAGCCGTATCACGGGCCGAACAACGAGTGAAGGAAGCCGCAAAGCTGGGCTTCAAACGAGTCATTTTACCAGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.284

100

0.657
  radA Streptococcus pneumoniae Rx1

59.333

98.901

0.587
  radA Streptococcus pneumoniae D39

59.333

98.901

0.587
  radA Streptococcus pneumoniae R6

59.333

98.901

0.587
  radA Streptococcus pneumoniae TIGR4

59.333

98.901

0.587
  radA Streptococcus mitis NCTC 12261

59.333

98.901

0.587
  radA Streptococcus mitis SK321

59.333

98.901

0.587

Multiple sequence alignment