Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   ACJX3V_RS05085 Genome accession   NZ_CP176523
Coordinates   978083..980965 (+) Length   960 a.a.
NCBI ID   WP_046559463.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 973083..985965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS05060 - 973521..974288 (+) 768 WP_007409232.1 enoyl-CoA hydratase -
  ACJX3V_RS05065 - 974313..974498 (-) 186 WP_003155259.1 YhzD family protein -
  ACJX3V_RS05070 - 974604..975500 (+) 897 WP_003155257.1 ABC transporter ATP-binding protein -
  ACJX3V_RS05075 - 975493..976752 (+) 1260 WP_014304724.1 ABC transporter permease -
  ACJX3V_RS05080 - 976863..978086 (+) 1224 WP_088037056.1 exonuclease SbcCD subunit D -
  ACJX3V_RS05085 sbcE 978083..980965 (+) 2883 WP_046559463.1 ATP-binding protein Machinery gene
  ACJX3V_RS05090 yhaM 981039..981983 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  ACJX3V_RS05095 - 982097..982324 (+) 228 WP_014304727.1 sporulation YhaL family protein -
  ACJX3V_RS05100 - 982364..983215 (-) 852 WP_003155249.1 peptidylprolyl isomerase -
  ACJX3V_RS05105 yhzE1 983374..983460 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  ACJX3V_RS05110 yhzE2 983585..983671 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  ACJX3V_RS05115 - 983728..983946 (-) 219 WP_003155245.1 hypothetical protein -
  ACJX3V_RS05120 - 984007..984537 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -
  ACJX3V_RS05125 - 984749..985090 (+) 342 WP_003155243.1 YhaI family protein -
  ACJX3V_RS05130 - 985087..985698 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109777.91 Da        Isoelectric Point: 7.4592

>NTDB_id=967353 ACJX3V_RS05085 WP_046559463.1 978083..980965(+) (sbcE) [Bacillus amyloliquefaciens strain MEPW12]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHVDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELERMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPDALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQAELLAPNEDLLQTERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNIDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQQLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGAGHKKKKPTISKEVADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLRVLLAQAERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGEKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREKTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLERLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=967353 ACJX3V_RS05085 WP_046559463.1 978083..980965(+) (sbcE) [Bacillus amyloliquefaciens strain MEPW12]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGATTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGTCGATCACGGTGCCGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTCTCCGATACAGACCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGGCTGGCAAAAGAACTTGAAAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGATGCATTGAAGCAATTCCCGAAGGA
CGGGATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCTGCCCGTCTTGAGGGACTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGAGCTGCTCGCTCCAAATGAGGACTTGCTGCAAACAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCGCGCGGCGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTCGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCACTGAACATCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTACAGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCAATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAGCCGCTGCCGTCAGAAAGAGGAGG
GGCCGGTCACAAGAAAAAGAAGCCGACGATCTCCAAAGAAGTGGCTGACCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCGGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAACTGGGTTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCGCGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTCCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAATCGCGAACACTTTTGTGAACTCGCCAGACTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGAAAAACAGCTTGAGCCGTATATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCGCAGCTCCGTGAGAAAACCG
CTTTATTAACGGTGAAACAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATCATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGACCGCTTACGGACGGACGTTACCATAAAT
TGTATTTCTCCGAGGCGGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCAGCAGGCGAACTGTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATCCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTTCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGGAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

56.846

100

0.571