Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACJX3V_RS03990 Genome accession   NZ_CP176523
Coordinates   773226..773942 (+) Length   238 a.a.
NCBI ID   WP_025854005.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 768226..778942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS03960 - 768403..768780 (+) 378 WP_173613097.1 DUF1992 domain-containing protein -
  ACJX3V_RS03965 - 768790..769221 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  ACJX3V_RS03970 - 769237..769479 (-) 243 WP_003155595.1 spore germination protein -
  ACJX3V_RS03975 - 769494..769754 (-) 261 WP_007408496.1 spore germination protein -
  ACJX3V_RS03980 treP 770026..771441 (+) 1416 WP_060562229.1 PTS system trehalose-specific EIIBC component -
  ACJX3V_RS03985 treC 771517..773202 (+) 1686 WP_207579489.1 alpha,alpha-phosphotrehalase -
  ACJX3V_RS03990 treR 773226..773942 (+) 717 WP_025854005.1 trehalose operon repressor Regulator
  ACJX3V_RS03995 - 774076..774741 (+) 666 WP_043866916.1 NAD(P)H-dependent oxidoreductase -
  ACJX3V_RS04000 - 774777..775538 (-) 762 WP_024085008.1 YibE/F family protein -
  ACJX3V_RS04005 - 775535..776674 (-) 1140 WP_003155584.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27424.49 Da        Isoelectric Point: 7.8941

>NTDB_id=967347 ACJX3V_RS03990 WP_025854005.1 773226..773942(+) (treR) [Bacillus amyloliquefaciens strain MEPW12]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTVAGEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=967347 ACJX3V_RS03990 WP_025854005.1 773226..773942(+) (treR) [Bacillus amyloliquefaciens strain MEPW12]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGCGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGTGGCGGGTGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42