Detailed information NTG0967343

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACJX3V_RS02260
• Genome accession: NZ_CP176523
• Coordinates: 443593..444723 (+)
• Length: 376 a.a.
• NCBI ID: WP_014304380.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MEPW12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 438593..449723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJX3V_RS02225	-	438705..438866 (+)	162	WP_014304372.1	hypothetical protein	-
ACJX3V_RS02230	-	438968..439534 (+)	567	WP_224979435.1	DUF4145 domain-containing protein	-
ACJX3V_RS02235	-	439660..439923 (+)	264	WP_048367719.1	hypothetical protein	-
ACJX3V_RS02240	-	439984..440226 (+)	243	Protein_402	phage terminase small subunit-related protein	-
ACJX3V_RS02245	-	440543..440797 (+)	255	Protein_403	peptidoglycan-binding domain-containing protein	-
ACJX3V_RS02250	-	441214..441981 (+)	768	WP_079890911.1	septation ring formation regulator EzrA	-
ACJX3V_RS02255	-	442044..443177 (+)	1134	WP_025853743.1	hypothetical protein	-
ACJX3V_RS02260	rapC	443593..444723 (+)	1131	WP_014304380.1	Rap family tetratricopeptide repeat protein	Regulator
ACJX3V_RS02265	-	444723..444857 (+)	135	WP_254922222.1	hypothetical protein	-
ACJX3V_RS02270	-	445217..445447 (-)	231	WP_025853742.1	hypothetical protein	-
ACJX3V_RS02275	-	445832..446389 (-)	558	WP_025853740.1	hypothetical protein	-
ACJX3V_RS02280	-	446486..447193 (-)	708	WP_224979436.1	hypothetical protein	-
ACJX3V_RS02285	-	447283..447549 (-)	267	WP_003156241.1	hypothetical protein	-
ACJX3V_RS02290	-	447656..448933 (-)	1278	WP_088005335.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44712.10 Da
• Isoelectric Point: 5.2992

>NTDB_id=967343 ACJX3V_RS02260 WP_014304380.1 443593..444723(+) (rapC) [Bacillus amyloliquefaciens strain MEPW12]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=967343 ACJX3V_RS02260 WP_014304380.1 443593..444723(+) (rapC) [Bacillus amyloliquefaciens strain MEPW12]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372