Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY27_RS17450 Genome accession   NZ_CP150239
Coordinates   3475521..3476894 (-) Length   457 a.a.
NCBI ID   WP_079523513.1    Uniprot ID   -
Organism   Solibacillus sp. FSL R5-0449     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3470521..3481894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY27_RS17430 (MKY27_17430) ispF 3472148..3472624 (-) 477 WP_339196592.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY27_RS17435 (MKY27_17435) ispD 3472747..3473427 (-) 681 WP_339174446.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY27_RS17440 (MKY27_17440) - 3473441..3474517 (-) 1077 WP_339174449.1 PIN/TRAM domain-containing protein -
  MKY27_RS17445 (MKY27_17445) - 3474802..3475449 (+) 648 WP_339196595.1 acetate uptake transporter -
  MKY27_RS17450 (MKY27_17450) radA 3475521..3476894 (-) 1374 WP_079523513.1 DNA repair protein RadA Machinery gene
  MKY27_RS17455 (MKY27_17455) - 3477003..3479159 (-) 2157 WP_339196597.1 leucine-rich repeat protein -
  MKY27_RS17460 (MKY27_17460) - 3479293..3481737 (-) 2445 WP_339196600.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50414.96 Da        Isoelectric Point: 7.0489

>NTDB_id=967322 MKY27_RS17450 WP_079523513.1 3475521..3476894(-) (radA) [Solibacillus sp. FSL R5-0449]
MAKKKSKFMCSSCGYEAAKWMGRCPGCGEWNTMNEEVEVITKGPRGAFQHSTTATKATPIIHVEVQEETRIATEMNEFNR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNQGKRVLYISGEESVRQTKLRAERLGVHTPELYIYSETNLEFLNQT
IDEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFEG
ERHHNHRILRSQKNRFGSTNEIAIFEMLHGGLKEVLNPSELFLQERSQGAPGSTIVASMEGTRPILVEIQSLVTPTSFNY
PKRMATGVDQNRVQLLMAVLEKRMGMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQTVRPTDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRAFIPASNIGGWEFPPDIQVVGVETISDALRESFQNL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=967322 MKY27_RS17450 WP_079523513.1 3475521..3476894(-) (radA) [Solibacillus sp. FSL R5-0449]
ATGGCAAAAAAGAAGTCTAAATTTATGTGCAGCAGCTGTGGCTATGAAGCGGCAAAATGGATGGGGCGCTGTCCTGGCTG
TGGTGAATGGAATACGATGAATGAAGAAGTCGAAGTCATCACAAAAGGGCCGCGTGGTGCGTTCCAGCATTCTACAACGG
CGACAAAGGCAACACCGATTATTCATGTGGAAGTACAGGAAGAAACACGTATCGCTACAGAAATGAATGAGTTCAACCGC
GTACTTGGGGGCGGTATTGTACCAGGCTCCCTAGTACTAATAGGCGGCGACCCGGGTATTGGGAAATCGACTTTATTACT
GCAAGTATCGGCGCTTCTTTCCAATCAGGGAAAACGTGTTTTATATATCTCGGGTGAAGAATCCGTACGTCAGACGAAGC
TGCGGGCTGAACGTCTAGGGGTACATACGCCGGAGCTTTATATTTACTCGGAAACGAATCTGGAGTTTTTAAATCAAACA
ATTGATGAAGTACAACCGAAATTTGTCATTGTCGATTCGATTCAAACGGTTCATCATCCGGAAGTGACAAGCGCACCGGG
CAGTGTTTCGCAAGTACGTGAATGTACAGCGGAACTGATGCGTATTGCAAAAACAAAAAACATCGCAATTTTCCTTGTTG
GTCACGTTACAAAAGAAGGTCAGATTGCCGGTCCGCGTATTTTGGAACATATGGTAGATACGGTGCTTTACTTTGAAGGG
GAACGCCATCATAACCACCGGATTTTACGCAGTCAGAAAAACCGTTTTGGATCTACAAATGAAATTGCGATTTTTGAAAT
GCTTCACGGGGGGCTAAAAGAAGTATTGAATCCATCCGAACTGTTTTTACAGGAACGATCGCAAGGTGCTCCCGGCTCAA
CGATCGTTGCATCGATGGAAGGGACACGTCCAATCCTGGTGGAAATACAGTCTCTTGTTACACCAACAAGTTTCAATTAT
CCGAAGCGTATGGCAACAGGGGTCGATCAAAACCGCGTACAGCTATTAATGGCGGTATTGGAAAAACGGATGGGCATGAT
GCTTCAGGCACAGGATGCATATATTAAAGTTGCCGGTGGCGTAAAGCTGGATGAGCCGGCGATTGATTTAGCTGTATTAA
CAAGTATTGTTTCAAGCTTTAAAGACCAGACAGTACGTCCGACAGACTGCTTTATCGGGGAAGTCGGGTTAACTGGTGAA
GTACGCCGTGTTTCAAGAATTGAACAGCGTGTACAGGAAGCGGCAAAGCTAGGATTTAAACGCGCCTTTATTCCAGCTTC
CAATATTGGGGGCTGGGAATTCCCGCCGGACATCCAAGTTGTTGGTGTCGAAACAATCAGTGATGCACTGCGGGAATCTT
TCCAGAATTTATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.524

100

0.707
  radA Streptococcus pneumoniae Rx1

63.02

100

0.63
  radA Streptococcus pneumoniae D39

63.02

100

0.63
  radA Streptococcus pneumoniae R6

63.02

100

0.63
  radA Streptococcus pneumoniae TIGR4

63.02

100

0.63
  radA Streptococcus mitis NCTC 12261

63.02

100

0.63
  radA Streptococcus mitis SK321

63.02

100

0.63

Multiple sequence alignment