Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKY27_RS10110 Genome accession   NZ_CP150239
Coordinates   2034220..2035911 (-) Length   563 a.a.
NCBI ID   WP_339194819.1    Uniprot ID   -
Organism   Solibacillus sp. FSL R5-0449     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2029220..2040911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY27_RS10090 (MKY27_10090) - 2030593..2031027 (-) 435 WP_339194811.1 hypothetical protein -
  MKY27_RS10095 (MKY27_10095) - 2031381..2031854 (+) 474 WP_339194813.1 DNA polymerase III subunit alpha -
  MKY27_RS10100 (MKY27_10100) spo0A 2031963..2032754 (-) 792 WP_079527582.1 sporulation transcription factor Spo0A -
  MKY27_RS10105 (MKY27_10105) - 2033105..2034028 (-) 924 WP_339194817.1 SpoIVB peptidase S55 domain-containing protein -
  MKY27_RS10110 (MKY27_10110) recN 2034220..2035911 (-) 1692 WP_339194819.1 DNA repair protein RecN Machinery gene
  MKY27_RS10115 (MKY27_10115) argR 2035928..2036377 (-) 450 WP_079527588.1 transcriptional regulator ArgR -
  MKY27_RS10120 (MKY27_10120) - 2036651..2037469 (-) 819 WP_339194821.1 TlyA family RNA methyltransferase -
  MKY27_RS10125 (MKY27_10125) dxs 2037476..2039371 (-) 1896 WP_339194822.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKY27_RS10130 (MKY27_10130) - 2039461..2040345 (-) 885 WP_339194825.1 polyprenyl synthetase family protein -
  MKY27_RS10135 (MKY27_10135) xseB 2040349..2040576 (-) 228 WP_008404237.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63652.15 Da        Isoelectric Point: 4.7245

>NTDB_id=967308 MKY27_RS10110 WP_339194819.1 2034220..2035911(-) (recN) [Solibacillus sp. FSL R5-0449]
MLRELSIRNFAIIDDLTVSFFGGLTVLTGETGAGKSIIIDAVNILAGGRGSTEFIRHGEKKAELGGLFHVDNSQHPIFAK
LEEHGIESEEDTIILRRDLHDSGKSVCRVNGKLVPLSVLRDIGGSLIDIHGQHENQELMDEKFHINLLDHYAHHELLPVK
AKYDEAYEAYRQLKREVSELSMDEQRMAQRIDLYQFQIQELEQAGLKIDEEEALDEERLRLMNFHKIFERANIAYSAISD
DGTGLDFIGNAMNALEDIVALDSNFKEASEAVTSSFYALQDAAYQVKNVLDDLEYDAERLNEVEQRLALYQTMKRKYGTT
VEEILTYHEKIEEELSQLMNRDETLQKNEQLLAKMEADLNKIADQLTTIRKENAIKLSDAIMNELRMLHMEKAQFIVKFE
PLNQLDANGKDFVAFYISTNVGEPPKSLPKVASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYYIKKQVEHNRTFTSITEMEEKERIVEISRMMSGAEITDLTLQHASELIHMANERKE
TMN

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=967308 MKY27_RS10110 WP_339194819.1 2034220..2035911(-) (recN) [Solibacillus sp. FSL R5-0449]
TTGTTAAGAGAATTAAGCATTCGAAATTTTGCTATTATTGATGATTTAACCGTTAGTTTTTTCGGAGGTCTGACTGTTTT
GACAGGTGAAACAGGTGCCGGAAAATCGATCATTATTGATGCGGTTAATATATTGGCTGGCGGACGAGGGTCTACCGAGT
TTATCCGCCATGGAGAAAAAAAAGCGGAACTGGGCGGCTTATTCCATGTGGATAATAGTCAGCATCCGATTTTTGCGAAA
CTCGAAGAACATGGGATAGAATCAGAGGAAGATACGATTATTTTAAGACGTGATTTGCATGATTCAGGAAAGAGTGTTTG
CAGAGTGAACGGCAAACTTGTTCCATTATCTGTTTTACGGGATATTGGCGGCAGTTTAATCGATATTCATGGACAGCATG
AAAATCAGGAGCTGATGGACGAAAAATTCCATATCAATTTACTCGATCATTATGCACATCATGAGCTTCTGCCGGTAAAG
GCGAAGTACGATGAAGCATATGAGGCGTACCGCCAATTGAAAAGAGAAGTGTCTGAGCTGAGTATGGACGAGCAGCGGAT
GGCACAGCGCATCGATTTATATCAATTCCAAATACAGGAGCTGGAACAGGCCGGTTTGAAAATTGATGAAGAAGAGGCAC
TGGATGAAGAACGTCTTCGTTTGATGAATTTCCATAAAATATTTGAGCGTGCGAACATTGCGTATTCAGCTATTTCCGAT
GATGGAACAGGACTGGATTTCATCGGGAATGCGATGAATGCTCTGGAAGACATTGTCGCGCTTGATTCGAATTTCAAAGA
GGCTTCTGAAGCGGTTACTTCGAGCTTTTATGCATTGCAGGATGCGGCATATCAAGTGAAAAATGTGCTTGATGATTTAG
AGTATGATGCGGAACGCTTGAACGAGGTCGAGCAGCGTCTTGCTTTATACCAAACTATGAAACGTAAATATGGTACGACA
GTTGAAGAGATTTTAACGTATCATGAAAAAATCGAAGAAGAGTTAAGCCAGCTTATGAACCGTGATGAAACATTGCAGAA
AAATGAACAATTGCTGGCGAAGATGGAAGCCGATCTTAATAAAATTGCAGATCAGTTGACGACGATCCGTAAAGAGAATG
CCATTAAGCTGAGTGATGCCATAATGAATGAGCTGCGGATGCTGCATATGGAAAAAGCGCAGTTTATCGTTAAATTCGAG
CCGCTTAATCAGCTGGATGCGAACGGCAAAGATTTTGTCGCATTCTACATTTCAACAAATGTTGGGGAACCACCGAAGTC
GCTGCCTAAAGTTGCTTCAGGCGGGGAACTTTCGCGGATGATGCTGGCGCTTAAAACGATTTTCTCTTCATCAAATGGCA
TTACATCGATTATTTTCGATGAGGTCGATACGGGTGTAAGCGGACGTGTCGCTCAGGCAATTGCAGAAAAAATTGCTGCT
ATTTCAGTCAATTCGCAAGTATTATGTATTTCTCACTTGCCGCAAGTTGCCGCAATGGCGGATCATCACTACTATATTAA
AAAGCAAGTAGAGCATAACCGTACATTTACATCAATTACGGAAATGGAAGAAAAGGAACGAATTGTGGAAATCAGCCGCA
TGATGAGCGGGGCCGAAATTACAGACCTGACATTACAACATGCTTCCGAATTAATCCATATGGCCAATGAACGTAAAGAA
ACGATGAATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.299

100

0.545

Multiple sequence alignment