Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKY99_RS22830 Genome accession   NZ_CP150238
Coordinates   5156770..5157201 (+) Length   143 a.a.
NCBI ID   WP_339271756.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0470     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5151770..5162201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY99_RS22800 (MKY99_22800) - 5152468..5152632 (+) 165 WP_179085776.1 hypothetical protein -
  MKY99_RS22805 (MKY99_22805) - 5152629..5152964 (-) 336 WP_042130171.1 YolD-like family protein -
  MKY99_RS22810 (MKY99_22810) - 5153347..5153907 (-) 561 WP_339266521.1 hypothetical protein -
  MKY99_RS22815 (MKY99_22815) - 5154025..5154513 (+) 489 WP_339266523.1 PH domain-containing protein -
  MKY99_RS22820 (MKY99_22820) - 5154596..5156071 (-) 1476 WP_339266525.1 glycosyl hydrolase -
  MKY99_RS22825 (MKY99_22825) - 5156246..5156662 (-) 417 WP_042194350.1 cytidine deaminase -
  MKY99_RS22830 (MKY99_22830) nucA/comI 5156770..5157201 (+) 432 WP_339271756.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKY99_RS22835 (MKY99_22835) - 5157280..5157426 (-) 147 WP_156113170.1 hypothetical protein -
  MKY99_RS22840 (MKY99_22840) - 5157576..5157752 (+) 177 WP_076098563.1 YjfB family protein -
  MKY99_RS22845 (MKY99_22845) - 5157893..5158435 (+) 543 WP_231573332.1 ImmA/IrrE family metallo-endopeptidase -
  MKY99_RS22850 (MKY99_22850) - 5158512..5158673 (+) 162 WP_179085777.1 hypothetical protein -
  MKY99_RS22855 (MKY99_22855) - 5158798..5158971 (-) 174 WP_156113172.1 hypothetical protein -
  MKY99_RS22860 (MKY99_22860) - 5159080..5159412 (+) 333 WP_042190784.1 hypothetical protein -
  MKY99_RS22865 (MKY99_22865) - 5159590..5160084 (+) 495 WP_042190786.1 sigma-70 family RNA polymerase sigma factor -
  MKY99_RS22870 (MKY99_22870) - 5160081..5161070 (+) 990 WP_339266528.1 hypothetical protein -
  MKY99_RS22875 (MKY99_22875) - 5161393..5161896 (-) 504 WP_339243098.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15915.75 Da        Isoelectric Point: 4.4729

>NTDB_id=967276 MKY99_RS22830 WP_339271756.1 5156770..5157201(+) (nucA/comI) [Paenibacillus sp. FSL R5-0470]
MQKLLTSLIIIVLLALGGYWYEQNGDPSTTSSTSDSEVVQLIFPSDRYPETAKHIQDAIAKGESATCTINREQAEDNRKE
SLKGIPTKKGYDRDEWPMAMCNEGGKGADIEYITPKDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=967276 MKY99_RS22830 WP_339271756.1 5156770..5157201(+) (nucA/comI) [Paenibacillus sp. FSL R5-0470]
ATACAGAAATTACTCACCAGTCTCATCATTATTGTGTTACTTGCTTTGGGCGGTTACTGGTATGAACAGAACGGAGATCC
GTCAACCACCTCGTCCACATCTGATTCAGAAGTTGTTCAGCTGATCTTCCCATCAGATCGTTATCCTGAGACTGCTAAGC
ACATTCAGGACGCGATTGCTAAAGGGGAGTCCGCGACGTGCACGATTAACCGTGAGCAGGCTGAAGACAACCGCAAAGAA
TCCTTAAAAGGGATCCCCACCAAAAAAGGCTACGACCGCGATGAATGGCCCATGGCCATGTGTAATGAAGGCGGCAAAGG
GGCCGACATTGAATACATAACCCCAAAAGATAACCGCGGTGCAGGAAGCTGGGTTGGCAATCAGTTAGAAGATTATGCGG
ATGGAACCCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.961

72.028

0.49

Multiple sequence alignment