Detailed information NTG0967188

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKZ9C_RS05165
• Genome accession: NZ_CP176489
• Coordinates: 1078476..1079468 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain N1420
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1073476..1084468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKZ9C_RS05135 (ACKZ9C_05135)	ispD	1073537..1074247 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKZ9C_RS05140 (ACKZ9C_05140)	ispF	1074247..1074726 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKZ9C_RS05145 (ACKZ9C_05145)	truD	1074723..1075772 (+)	1050	WP_033555604.1	tRNA pseudouridine(13) synthase TruD	-
ACKZ9C_RS05150 (ACKZ9C_05150)	surE	1075753..1076514 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACKZ9C_RS05155 (ACKZ9C_05155)	pcm	1076508..1077134 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ACKZ9C_RS05160 (ACKZ9C_05160)	nlpD	1077319..1078413 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACKZ9C_RS05165 (ACKZ9C_05165)	rpoS	1078476..1079468 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACKZ9C_RS05170 (ACKZ9C_05170)	-	1079646..1080197 (-)	552	WP_001179442.1	flavodoxin family protein	-
ACKZ9C_RS05175 (ACKZ9C_05175)	-	1080422..1081465 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
ACKZ9C_RS05180 (ACKZ9C_05180)	ygbN	1081608..1082972 (-)	1365	WP_033555607.1	GntP family transporter	-
ACKZ9C_RS05185 (ACKZ9C_05185)	ygbM	1083061..1083837 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=967188 ACKZ9C_RS05165 WP_000081550.1 1078476..1079468(+) (rpoS) [Escherichia coli strain N1420]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=967188 ACKZ9C_RS05165 WP_000081550.1 1078476..1079468(+) (rpoS) [Escherichia coli strain N1420]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715