Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACKZ9C_RS03920 Genome accession   NZ_CP176489
Coordinates   810141..811379 (-) Length   412 a.a.
NCBI ID   WP_033555502.1    Uniprot ID   -
Organism   Escherichia coli strain N1420     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 805141..816379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ9C_RS03910 (ACKZ9C_03910) - 805210..806478 (+) 1269 WP_064752767.1 CatB-related O-acetyltransferase -
  ACKZ9C_RS03915 (ACKZ9C_03915) - 806475..809774 (+) 3300 WP_033555503.1 HAD-IA family hydrolase -
  ACKZ9C_RS03920 (ACKZ9C_03920) kpsS 810141..811379 (-) 1239 WP_033555502.1 capsule biosynthesis protein Regulator
  ACKZ9C_RS03925 (ACKZ9C_03925) - 811414..813441 (-) 2028 WP_033555500.1 capsular polysaccharide biosynthesis protein -
  ACKZ9C_RS03930 (ACKZ9C_03930) kdsB 813438..814178 (-) 741 WP_000030755.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACKZ9C_RS03935 (ACKZ9C_03935) - 814188..815864 (-) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 49052.52 Da        Isoelectric Point: 10.1103

>NTDB_id=967183 ACKZ9C_RS03920 WP_033555502.1 810141..811379(-) (kpsS) [Escherichia coli strain N1420]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGGNKGNTRTYF
YLNSLDKYSYSK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=967183 ACKZ9C_RS03920 WP_033555502.1 810141..811379(-) (kpsS) [Escherichia coli strain N1420]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGGGAACGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGGGAATAAAGGAAATACGAGAACGTATTTT
TATTTAAATAGTTTAGATAAATATTCATACAGTAAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

94.417

0.379