Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACKZ9B_RS20980 Genome accession   NZ_CP176488
Coordinates   4126522..4127739 (+) Length   405 a.a.
NCBI ID   WP_021523265.1    Uniprot ID   -
Organism   Escherichia coli strain N1131     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4121522..4132739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ9B_RS20965 (ACKZ9B_20960) - 4122037..4123713 (+) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -
  ACKZ9B_RS20970 (ACKZ9B_20965) kdsB 4123723..4124463 (+) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACKZ9B_RS20975 (ACKZ9B_20970) - 4124460..4126487 (+) 2028 WP_000579533.1 capsular polysaccharide biosynthesis protein -
  ACKZ9B_RS20980 (ACKZ9B_20975) kpsS 4126522..4127739 (+) 1218 WP_021523265.1 capsule biosynthesis protein Regulator
  ACKZ9B_RS20985 (ACKZ9B_20980) - 4127891..4129231 (-) 1341 WP_016231189.1 glycosyltransferase family 2 protein -
  ACKZ9B_RS20990 (ACKZ9B_20985) - 4129360..4130529 (-) 1170 WP_016231190.1 nucleotide sugar dehydrogenase -
  ACKZ9B_RS20995 (ACKZ9B_20990) - 4130667..4131794 (-) 1128 WP_016231191.1 polysaccharide pyruvyl transferase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 48449.20 Da        Isoelectric Point: 10.2265

>NTDB_id=967140 ACKZ9B_RS20980 WP_021523265.1 4126522..4127739(+) (kpsS) [Escherichia coli strain N1131]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPWLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVIYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKI
KKIKR

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=967140 ACKZ9B_RS20980 WP_021523265.1 4126522..4127739(+) (kpsS) [Escherichia coli strain N1131]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGTGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATATACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAGATA
AAAAAGATAAAAAGATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.899

97.778

0.39