Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY51_RS17535 Genome accession   NZ_CP150231
Coordinates   3471341..3472714 (-) Length   457 a.a.
NCBI ID   WP_079523513.1    Uniprot ID   -
Organism   Solibacillus sp. FSL R5-0691     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3466341..3477714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY51_RS17515 (MKY51_17515) ispF 3467967..3468443 (-) 477 WP_339174445.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY51_RS17520 (MKY51_17520) ispD 3468566..3469246 (-) 681 WP_339174446.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY51_RS17525 (MKY51_17525) - 3469260..3470336 (-) 1077 WP_339174449.1 PIN/TRAM domain-containing protein -
  MKY51_RS17530 (MKY51_17530) - 3470623..3471270 (+) 648 WP_339174452.1 acetate uptake transporter -
  MKY51_RS17535 (MKY51_17535) radA 3471341..3472714 (-) 1374 WP_079523513.1 DNA repair protein RadA Machinery gene
  MKY51_RS17540 (MKY51_17540) - 3472979..3475423 (-) 2445 WP_339174457.1 ATP-dependent Clp protease ATP-binding subunit -
  MKY51_RS17545 (MKY51_17545) - 3475420..3476517 (-) 1098 WP_339174460.1 protein arginine kinase -
  MKY51_RS17550 (MKY51_17550) - 3476514..3477056 (-) 543 WP_079523516.1 UvrB/UvrC motif-containing protein -
  MKY51_RS17555 (MKY51_17555) - 3477069..3477533 (-) 465 WP_339174464.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50414.96 Da        Isoelectric Point: 7.0489

>NTDB_id=967107 MKY51_RS17535 WP_079523513.1 3471341..3472714(-) (radA) [Solibacillus sp. FSL R5-0691]
MAKKKSKFMCSSCGYEAAKWMGRCPGCGEWNTMNEEVEVITKGPRGAFQHSTTATKATPIIHVEVQEETRIATEMNEFNR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNQGKRVLYISGEESVRQTKLRAERLGVHTPELYIYSETNLEFLNQT
IDEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFEG
ERHHNHRILRSQKNRFGSTNEIAIFEMLHGGLKEVLNPSELFLQERSQGAPGSTIVASMEGTRPILVEIQSLVTPTSFNY
PKRMATGVDQNRVQLLMAVLEKRMGMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQTVRPTDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRAFIPASNIGGWEFPPDIQVVGVETISDALRESFQNL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=967107 MKY51_RS17535 WP_079523513.1 3471341..3472714(-) (radA) [Solibacillus sp. FSL R5-0691]
ATGGCAAAAAAGAAGTCTAAATTTATGTGCAGCAGCTGTGGCTATGAAGCGGCAAAATGGATGGGGCGCTGTCCTGGCTG
TGGTGAATGGAATACGATGAATGAAGAAGTCGAAGTCATCACAAAAGGGCCGCGTGGTGCGTTCCAGCATTCTACAACGG
CGACAAAGGCAACACCGATTATTCATGTGGAAGTACAGGAAGAAACACGTATCGCTACAGAAATGAATGAGTTCAACCGC
GTACTTGGGGGCGGTATTGTACCAGGCTCCCTAGTACTAATAGGCGGCGACCCGGGTATTGGGAAATCGACTTTATTACT
GCAAGTATCGGCGCTTCTTTCCAATCAGGGAAAACGTGTTTTATATATCTCGGGTGAAGAATCCGTACGTCAGACGAAGC
TGCGGGCTGAACGTCTAGGGGTACATACGCCGGAGCTTTATATTTACTCGGAAACGAATCTGGAGTTTTTAAATCAAACA
ATTGATGAAGTACAACCGAAATTTGTCATTGTCGATTCGATTCAAACGGTTCATCATCCGGAAGTGACAAGCGCACCGGG
CAGTGTTTCGCAAGTACGTGAATGTACAGCGGAACTGATGCGTATTGCAAAAACAAAAAACATCGCAATTTTCCTTGTTG
GTCACGTTACAAAAGAAGGTCAGATTGCCGGTCCGCGTATTTTGGAACATATGGTAGATACGGTGCTTTACTTTGAAGGG
GAACGCCATCATAACCACCGGATTTTACGCAGTCAGAAAAACCGTTTTGGATCTACAAATGAAATTGCGATTTTTGAAAT
GCTTCACGGGGGGCTAAAAGAAGTATTGAATCCATCCGAACTGTTTTTACAGGAACGATCGCAAGGTGCTCCCGGCTCAA
CGATCGTTGCATCGATGGAAGGGACACGTCCAATCCTGGTGGAAATACAGTCTCTTGTTACACCAACAAGTTTCAATTAT
CCGAAGCGTATGGCAACAGGGGTCGATCAAAACCGCGTACAGCTATTAATGGCGGTATTGGAAAAACGGATGGGCATGAT
GCTTCAGGCACAGGATGCTTATATTAAAGTTGCAGGTGGCGTGAAGCTGGATGAGCCGGCGATTGATTTAGCTGTATTAA
CAAGTATTGTTTCAAGCTTTAAAGACCAAACAGTACGTCCGACAGACTGCTTTATCGGGGAAGTCGGATTAACCGGTGAG
GTACGTCGCGTTTCGAGAATTGAACAGCGTGTTCAGGAAGCGGCAAAGCTTGGGTTTAAACGAGCATTTATTCCAGCTTC
TAATATTGGCGGCTGGGAATTCCCGCCGGACATTCAAGTCGTTGGCGTCGAAACAATCAGTGACGCGCTAAGGGAATCTT
TCCAGAATTTATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.524

100

0.707
  radA Streptococcus pneumoniae Rx1

63.02

100

0.63
  radA Streptococcus pneumoniae D39

63.02

100

0.63
  radA Streptococcus pneumoniae R6

63.02

100

0.63
  radA Streptococcus pneumoniae TIGR4

63.02

100

0.63
  radA Streptococcus mitis NCTC 12261

63.02

100

0.63
  radA Streptococcus mitis SK321

63.02

100

0.63

Multiple sequence alignment