Detailed information NTG0967018

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKZ9A_RS06765
• Genome accession: NZ_CP176484
• Coordinates: 1040355..1041347 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain N921
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1035355..1046347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKZ9A_RS06735 (ACKZ9A_06735)	ispD	1035416..1036126 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKZ9A_RS06740 (ACKZ9A_06740)	ispF	1036126..1036605 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKZ9A_RS06745 (ACKZ9A_06745)	truD	1036602..1037651 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACKZ9A_RS06750 (ACKZ9A_06750)	surE	1037632..1038393 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACKZ9A_RS06755 (ACKZ9A_06755)	pcm	1038387..1039013 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACKZ9A_RS06760 (ACKZ9A_06760)	nlpD	1039198..1040292 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACKZ9A_RS06765 (ACKZ9A_06765)	rpoS	1040355..1041347 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACKZ9A_RS06770 (ACKZ9A_06770)	ygbN	1041441..1042805 (-)	1365	WP_000104441.1	GntP family transporter	-
ACKZ9A_RS06775 (ACKZ9A_06775)	ygbM	1042894..1043670 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACKZ9A_RS06780 (ACKZ9A_06780)	ygbL	1043675..1044313 (-)	639	WP_001278994.1	aldolase	-
ACKZ9A_RS06785 (ACKZ9A_06785)	otnK	1044310..1045572 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=967018 ACKZ9A_RS06765 WP_000081550.1 1040355..1041347(+) (rpoS) [Escherichia coli strain N921]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=967018 ACKZ9A_RS06765 WP_000081550.1 1040355..1041347(+) (rpoS) [Escherichia coli strain N921]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715