Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKY19_RS06310 Genome accession   NZ_CP150228
Coordinates   1423581..1424528 (+) Length   315 a.a.
NCBI ID   WP_042125010.1    Uniprot ID   A0A089IDW0
Organism   Paenibacillus sp. FSL R5-0744     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418581..1429528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY19_RS06285 (MKY19_06285) - 1419875..1420969 (-) 1095 WP_339801293.1 Xaa-Pro peptidase family protein -
  MKY19_RS06290 (MKY19_06290) - 1421262..1422146 (+) 885 WP_339801297.1 SDR family oxidoreductase -
  MKY19_RS06295 (MKY19_06295) - 1422130..1422633 (+) 504 WP_042185652.1 GNAT family N-acetyltransferase -
  MKY19_RS06300 (MKY19_06300) - 1422652..1422996 (-) 345 WP_339801300.1 helix-turn-helix domain-containing protein -
  MKY19_RS06305 (MKY19_06305) - 1423106..1423348 (+) 243 WP_143759304.1 YqkE family protein -
  MKY19_RS06310 (MKY19_06310) ceuB 1423581..1424528 (+) 948 WP_042125010.1 ABC transporter permease Machinery gene
  MKY19_RS06315 (MKY19_06315) - 1424531..1425475 (+) 945 WP_042125012.1 iron chelate uptake ABC transporter family permease subunit -
  MKY19_RS06320 (MKY19_06320) - 1425469..1426224 (+) 756 WP_339801304.1 ABC transporter ATP-binding protein -
  MKY19_RS06325 (MKY19_06325) - 1426348..1427340 (+) 993 WP_280788796.1 siderophore ABC transporter substrate-binding protein -
  MKY19_RS06330 (MKY19_06330) - 1427515..1428018 (+) 504 WP_042185661.1 sigma-70 family RNA polymerase sigma factor -
  MKY19_RS06335 (MKY19_06335) - 1428011..1429204 (+) 1194 WP_339269379.1 anti-sigma factor -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34515.72 Da        Isoelectric Point: 10.0524

>NTDB_id=967008 MKY19_RS06310 WP_042125010.1 1423581..1424528(+) (ceuB) [Paenibacillus sp. FSL R5-0744]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFSLTESQMQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLV
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYVFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKNLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=967008 MKY19_RS06310 WP_042125010.1 1423581..1424528(+) (ceuB) [Paenibacillus sp. FSL R5-0744]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTCTCATTTATATCTTTGTTTATAGGCGTAAAAGACATTTCACC
TTTGGATCTTTTTTCGCTTACAGAATCTCAGATGCAGACTCTGTTAGTCAGCCGGATTCCACGCTTAGCTGCACTGATTA
TAGCTGGTGTAAGCATGAGTATTGCCGGATTAATTATGCAGCAATTATCACGGAATAAATTCGTTTCTCCCACTACGGCG
GGCACGATGGATTCCGCGAAATTCGGTATTCTCGTGTCCCTGATGCTGTTCACAGGGGCGACACCGATGCAGAAGCTGCT
CGTTGCTTTTGTTTTTGCCCTACTGGGAACATTTATATTTATGAGAATCTTAGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGGAACATTGTAGGCTCGATTACTACATTTTTTGCTTACAAAAATGATTTGGTT
CAGAATATCTCATCTTGGATGCTTGGCGATTTCTCAACGATTATTAAGGGTCAATACGAATTAATCTATATCAGTATTCC
ACTTGTCATTCTCGCGTATGTTTTCGCCAATAAGTTCACCGTTGCCGGGATGGGGGAGGATTTCTCCGTCAATCTCGGTA
TGAACTACAAAGCGGTAGTGAACGTAGGATTGGTGATTGTAGCGTTAATTTCTTCAGTTGTTATTTTAACCGTAGGTACG
ATTCCATTCCTGGGTCTTGTTGTACCTAACATAGTAACGCTATACATAGGCGATAACTTGAAAAAAAATCTGGCGCATAC
TGCCATTCTAGGTGCGGTGTTTCTCCTGTTCTGTGATATTCTGGGCAGGCTCATTATATATCCATACGAAATATCCATCA
GTCTCACGGTAGGCGTCATCGGAAGTGGTCTATTTATCTACTTGCTGATGAGAAGAAAGGCGAATTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089IDW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559

Multiple sequence alignment