Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NST03_RS28710 Genome accession   NZ_CP150226
Coordinates   6673441..6675198 (-) Length   585 a.a.
NCBI ID   WP_042238256.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0912     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6668441..6680198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST03_RS28670 (NST03_28670) - 6668659..6668829 (-) 171 WP_156123281.1 hypothetical protein -
  NST03_RS28675 (NST03_28675) - 6668826..6669263 (-) 438 WP_042238261.1 hypothetical protein -
  NST03_RS28680 (NST03_28680) - 6669296..6669691 (-) 396 WP_197072967.1 cache domain-containing protein -
  NST03_RS28685 (NST03_28685) - 6669738..6670100 (+) 363 WP_231637939.1 hypothetical protein -
  NST03_RS28690 (NST03_28690) - 6670001..6670447 (+) 447 Protein_5616 carbohydrate ABC transporter permease -
  NST03_RS28695 (NST03_28695) - 6670613..6670759 (+) 147 WP_144026097.1 lmo0937 family membrane protein -
  NST03_RS28700 (NST03_28700) - 6670969..6671532 (+) 564 WP_042238258.1 5'-nucleotidase -
  NST03_RS28705 (NST03_28705) rcrQ 6671675..6673441 (-) 1767 WP_197072966.1 ABC transporter ATP-binding protein Regulator
  NST03_RS28710 (NST03_28710) rcrP 6673441..6675198 (-) 1758 WP_042238256.1 ABC transporter ATP-binding protein Regulator
  NST03_RS28715 (NST03_28715) - 6675687..6676751 (+) 1065 WP_042238254.1 suppressor of fused domain protein -
  NST03_RS28720 (NST03_28720) - 6676825..6677895 (-) 1071 WP_197072965.1 HAMP domain-containing sensor histidine kinase -
  NST03_RS28725 (NST03_28725) - 6677892..6678563 (-) 672 WP_042238251.1 response regulator transcription factor -
  NST03_RS28730 (NST03_28730) - 6678741..6679847 (+) 1107 WP_042238249.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64163.63 Da        Isoelectric Point: 6.8629

>NTDB_id=966970 NST03_RS28710 WP_042238256.1 6673441..6675198(-) (rcrP) [Paenibacillus sp. FSL R5-0912]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPDYMSDITRLIQTPGSQMSEILTAGAWMLLCALGSLATSIVVAGIAA
RIAADLSARLRANLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAILKITGKSWQWTLA
TGASVGLLVLIVAVCITLVLPKFKKLQQLTDNLNRVSRENLNGLRVIRAYNAEKYQEGKFASANNELTRTNLFANNVMTT
LMPSISLIMSGLSLSIYWIGAVIIQAADGTAKMGLFSDMIVFSSYAIQVVMAFMMLIMIFILLPRAQVSAKRINEVLETV
PSLKNGSVTHFPVKRVDELEFRGVSFKYPDAEDYVLENISFTAKQGETVAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVKEYDQQALRNKMGYVSQKAVLFGGTVTSNIAFGENGAGQVLSSDIVDAVYTSQSSEFVEKLEGSYDAHIAQGGSNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKVASASTMLIVAQRIGTIKDADKIIVLEAGQIAGMGT
HDELMHTCSVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=966970 NST03_RS28710 WP_042238256.1 6673441..6675198(-) (rcrP) [Paenibacillus sp. FSL R5-0912]
ATGTTGAAATTACTGAAGAACCTGGAGCCCAAAGAATGGTTCTTATTCGGCATCAGCCTCATGTTCATTATCGCGCAGGT
CTGGCTGGATCTGGAGCTGCCTGACTACATGAGTGATATTACCCGGCTGATCCAGACCCCGGGCAGCCAAATGAGTGAGA
TCCTGACCGCCGGAGCCTGGATGCTGCTCTGTGCACTCGGCAGTCTGGCCACCTCGATTGTCGTGGCAGGGATTGCCGCC
AGAATCGCGGCCGACCTGTCAGCCAGATTACGCGCTAATTTGTTTGATAAGGTGCAGTCTTTCTCAATGGAGGAGATCAG
CAACTTCTCCACCGCCAGCCTGATTACCCGGTCCACGAATGATATCACCCAGGTGCAGATGCTGATTGTCATCGGCTTGC
AATTGCTGGTCAAAGCACCCATCCTTGCCGTATGGGCGATCCTCAAGATTACGGGAAAAAGCTGGCAGTGGACGCTGGCG
ACCGGCGCCTCTGTTGGGCTGCTGGTGCTGATTGTCGCCGTCTGCATCACTCTCGTTCTTCCTAAATTCAAGAAACTGCA
GCAGTTAACCGACAATCTGAACCGTGTCTCCAGAGAGAATCTGAACGGTCTGCGGGTCATCCGGGCTTACAATGCCGAGA
AATACCAGGAAGGGAAATTTGCCTCCGCCAACAACGAGCTAACCCGCACCAATTTGTTTGCCAACAATGTAATGACAACG
CTGATGCCGAGTATTTCCCTGATTATGAGCGGACTCAGCCTCTCCATCTATTGGATTGGTGCTGTAATTATTCAAGCGGC
TGACGGCACCGCCAAGATGGGCTTGTTCTCAGATATGATTGTCTTCTCATCGTACGCGATACAGGTGGTTATGGCCTTCA
TGATGCTGATCATGATCTTCATTCTGCTGCCCCGCGCCCAGGTATCGGCCAAACGTATTAATGAGGTGCTGGAAACCGTG
CCTAGCCTGAAGAACGGATCAGTTACTCATTTCCCTGTGAAGCGTGTGGATGAGCTTGAATTCAGAGGGGTTAGCTTCAA
ATATCCGGACGCAGAGGATTATGTGCTGGAGAACATCAGCTTCACGGCGAAGCAGGGGGAGACGGTTGCTTTTATCGGCT
CAACAGGCTGCGGCAAGAGTACGCTTGTTAATCTCATTCCCCGTTTCTATGATGCTACCGAAGGCGAAGTGCTCGTGAAT
GGCATCAATGTCAAAGAATACGACCAGCAGGCGCTGCGGAATAAAATGGGCTATGTCTCCCAGAAGGCGGTACTGTTCGG
CGGAACGGTAACTTCGAATATTGCTTTTGGCGAGAATGGTGCCGGTCAGGTGCTCAGCTCCGATATTGTAGATGCGGTTT
ACACGTCCCAATCCTCTGAATTTGTGGAAAAGCTGGAGGGCAGCTACGATGCCCACATCGCCCAAGGGGGCTCCAATCTG
TCCGGCGGACAGAAGCAGCGGCTCTCGATTGCCAGAGCAATTGCCCGGCGCCCGGAAATTCTGATCTTCGATGATTCGTT
CTCGGCGCTTGACTATAAGACGGACCGCAAGCTGCGCAGCGAGTTGAAGAAGGTTGCTTCTGCATCCACGATGCTGATCG
TTGCCCAGCGCATTGGTACGATTAAAGACGCCGACAAAATCATCGTACTGGAAGCCGGACAAATTGCCGGAATGGGCACG
CATGACGAATTAATGCACACCTGCAGCGTCTATCAGGAAATTGCTTACTCACAGCTGACCAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.174

100

0.521

Multiple sequence alignment