Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACJPHY_RS21705 Genome accession   NZ_CP176424
Coordinates   4660793..4662286 (+) Length   497 a.a.
NCBI ID   WP_074222160.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain IGLPR01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4655793..4667286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJPHY_RS21675 - 4656005..4656814 (-) 810 WP_003094343.1 ABC transporter ATP-binding protein -
  ACJPHY_RS21680 kdsD 4657228..4658208 (+) 981 WP_170870978.1 arabinose-5-phosphate isomerase KdsD -
  ACJPHY_RS21685 - 4658208..4658747 (+) 540 WP_074222161.1 HAD family hydrolase -
  ACJPHY_RS21690 lptC 4658756..4659328 (+) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  ACJPHY_RS21695 lptA 4659315..4659842 (+) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  ACJPHY_RS21700 lptB 4659842..4660567 (+) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  ACJPHY_RS21705 rpoN/rpoN1 4660793..4662286 (+) 1494 WP_074222160.1 RNA polymerase factor sigma-54 Machinery gene
  ACJPHY_RS21710 hpf 4662364..4662672 (+) 309 WP_003094359.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACJPHY_RS21715 ptsN 4662686..4663150 (+) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACJPHY_RS21720 rapZ 4663152..4664012 (+) 861 WP_003094361.1 RNase adapter RapZ -
  ACJPHY_RS21725 - 4664042..4664314 (+) 273 WP_003094362.1 HPr family phosphocarrier protein -
  ACJPHY_RS21730 - 4664411..4665343 (-) 933 WP_074222159.1 ZIP family metal transporter -
  ACJPHY_RS21735 - 4665362..4665973 (-) 612 WP_003098862.1 superoxide dismutase -
  ACJPHY_RS21740 - 4665986..4666435 (-) 450 WP_003094369.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56070.21 Da        Isoelectric Point: 4.4327

>NTDB_id=966946 ACJPHY_RS21705 WP_074222160.1 4660793..4662286(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain IGLPR01]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASSPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=966946 ACJPHY_RS21705 WP_074222160.1 4660793..4662286(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain IGLPR01]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCAGCTCGCCCCAGGAGAGCCCTCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGTAGCCTGCCCAGCAACGACGATGACGAATGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTACGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCGCGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGATAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTACAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGCGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGTATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGTATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.85

100

0.479