Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKZ16_RS24165 Genome accession   NZ_CP150225
Coordinates   5341747..5342178 (+) Length   143 a.a.
NCBI ID   WP_076103822.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0928     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5336747..5347178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ16_RS24130 (MKZ16_24130) - 5336826..5337512 (-) 687 WP_076103797.1 M15 family metallopeptidase -
  MKZ16_RS24135 (MKZ16_24135) - 5337630..5337794 (+) 165 WP_169744799.1 hypothetical protein -
  MKZ16_RS24140 (MKZ16_24140) - 5337791..5338126 (-) 336 WP_036683341.1 YolD-like family protein -
  MKZ16_RS24145 (MKZ16_24145) - 5338334..5338894 (-) 561 WP_076098564.1 hypothetical protein -
  MKZ16_RS24150 (MKZ16_24150) - 5339012..5339500 (+) 489 WP_036683346.1 PH domain-containing protein -
  MKZ16_RS24155 (MKZ16_24155) - 5339574..5341049 (-) 1476 WP_036683349.1 glycosyl hydrolase -
  MKZ16_RS24160 (MKZ16_24160) - 5341224..5341640 (-) 417 WP_076103796.1 cytidine deaminase -
  MKZ16_RS24165 (MKZ16_24165) nucA/comI 5341747..5342178 (+) 432 WP_076103822.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKZ16_RS24170 (MKZ16_24170) - 5342260..5342409 (-) 150 WP_155288175.1 hypothetical protein -
  MKZ16_RS24175 (MKZ16_24175) - 5342559..5342735 (+) 177 WP_076098563.1 YjfB family protein -
  MKZ16_RS24180 (MKZ16_24180) - 5342899..5343450 (+) 552 WP_036683410.1 ImmA/IrrE family metallo-endopeptidase -
  MKZ16_RS24185 (MKZ16_24185) - 5343517..5343678 (+) 162 WP_155288176.1 hypothetical protein -
  MKZ16_RS24190 (MKZ16_24190) - 5343762..5343908 (-) 147 WP_155288177.1 hypothetical protein -
  MKZ16_RS24195 (MKZ16_24195) - 5344018..5344353 (+) 336 WP_076103794.1 hypothetical protein -
  MKZ16_RS24200 (MKZ16_24200) - 5344798..5345292 (+) 495 WP_076103793.1 sigma-70 family RNA polymerase sigma factor -
  MKZ16_RS24205 (MKZ16_24205) - 5345289..5346278 (+) 990 WP_081393319.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15912.71 Da        Isoelectric Point: 4.3968

>NTDB_id=966927 MKZ16_RS24165 WP_076103822.1 5341747..5342178(+) (nucA/comI) [Paenibacillus sp. FSL R5-0928]
MKKWISSLIIVALLALASYWFEQNGEPTDPSSPSNSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCEEGGIGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=966927 MKZ16_RS24165 WP_076103822.1 5341747..5342178(+) (nucA/comI) [Paenibacillus sp. FSL R5-0928]
GTGAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGGAGAGCC
TACAGACCCCTCGTCTCCATCCAATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCGCCAAGC
ATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGCAAAGAG
TCCTTAAAAGGGATCCCTACTAAAAAGGGATATGACCGGGATGAATGGCCAATGGCTATGTGTGAGGAAGGCGGCATTGG
TGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATTATGCAG
ACGGAACCCGGGTGGAATTTATGTTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

72.028

0.497

Multiple sequence alignment